Pseudarthrobacter sp. NIBRBAC000502771: NIBR502771_18400
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Entry
NIBR502771_18400 CDS
T06121
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
psni
Pseudarthrobacter sp. NIBRBAC000502771
Pathway
psni03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psni00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NIBR502771_18400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psni03019
]
NIBR502771_18400
Messenger RNA biogenesis [BR:
psni03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NIBR502771_18400
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GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
DUF459
Motif
Other DBs
NCBI-ProteinID:
QDG64084
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Position
complement(3952734..3954425)
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AA seq
563 aa
AA seq
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MTQTALTGLVTPPRLPQGTLRIVPLGGLGEIGRNMAVFEIDGKLLIVDCGVLFPEETQPG
VDLILPDFSYIEDRLDDVVAVILTHGHEDHIGAVPYLLRLRNDIPLVGSQLTLALIEAKL
QEHRIRPYTLTVEEGQVEKFGPFECEFVAVNHSIPDALAVFIRTAGGTVLHTGDFKMDQL
PLDGRITDLRHFAKLGEEGVDLFMSDSTNADVPGFTTAEKEIGPTLERLFGQATKRIIVA
SFSSHVHRVQQVLDAAAKHNRKVAFVGRSMVRNMAIAEKLGYLDVPAGLIVDIKNIDNLP
DNRVVLMSTGSQGEPMAALSRMANGDHRVVVGDGDTVILASSLIPGNENAVFRIINGLLK
LGADVIHKGNAKVHVSGHAAAGELLYCYNILEPLNAMPVHGETRHLIANGKIAIESGVPE
ASVILADNGTVIDLRDHQADIVGQVEVGFVYVDGSSVGEITDADLKDRRILGDEGFISII
TVIHRATGKVVSGPEIHARGVAEDDSVFDDIIPKINAALEEAVQNNADHTSHQLQQVVRR
VVGTWVNRKLRRKPMIIPVVLEA
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgacccaaactgcccttaccggccttgtcacccctccgcgcctgccccagggcacgctc
aggatcgttccgcttggcggactcggggaaatcggccggaacatggccgtgttcgaaatc
gacggcaagctgctgatcgtggactgcggcgtcctcttccccgaggaaacccagcccggc
gttgacctgatcctgccggatttctcctacatcgaggaccggctggacgacgtcgtggcc
gtcatcctcacccatggccacgaggaccacatcggcgccgtgccgtacctgctgcgcctg
cgcaatgacattcccctggtcggttcccagctgacgcttgccctgatcgaggcaaagctg
caggagcaccgcatccggccctacacgctgacggtcgaagagggccaggtggagaagttc
gggccgttcgaatgcgaattcgtcgccgtgaaccactccatcccggatgccctcgccgtc
tttatccgcaccgccggcggcactgtcctgcacaccggtgacttcaagatggaccagctg
ccgctggacggacgcatcaccgacctgcgccacttcgccaagctgggcgaagagggcgtt
gacctcttcatgtccgactccaccaacgccgacgtccccggcttcaccacggccgagaag
gaaatcgggccgaccctggagcgcctcttcggccaggccaccaagcgcatcatcgtggcg
tctttctcctcccacgtgcaccgcgtgcagcaggtcctcgacgccgccgccaagcacaac
cgcaaggtggccttcgtgggccgctccatggtccgcaacatggccattgccgaaaagctg
ggctacctggacgtcccggccgggctgatcgtcgacatcaagaacatcgacaacctgccg
gacaaccgggtggtcctgatgtccaccggttcgcagggcgagcccatggcggccctgtcc
cggatggcaaacggtgaccaccgggtggtggtgggggacggcgataccgtcatcctggcc
tccagcctcatcccgggcaacgagaacgccgtgttccggatcatcaacggcctcctcaag
cttggcgccgacgtcatccacaagggcaacgccaaggtccacgtctccggccacgccgcg
gccggcgaactgctctactgctacaacatcctcgagccgctcaacgcgatgccggttcac
ggcgaaacccgccacctgatcgccaacggcaagatcgccatcgagtccggcgttcccgaa
gccagcgtcatcctcgcggacaacggcaccgtcatcgaccttcgcgaccaccaggcagac
atcgtgggccaggtggaggtgggcttcgtctacgttgacggctccagcgttggggagatc
acggacgccgacctcaaggaccgcaggatcctgggcgacgaaggcttcatctcgatcatc
acggtgatccaccgcgccaccggcaaggtggtgtccggccccgagatccatgcccgcggc
gttgccgaagacgactccgtcttcgacgacatcatccccaagatcaacgcggcactggaa
gaagcggtccagaacaatgcggaccacaccagccaccagctccagcaggtggtgcgccgc
gtcgtgggcacctgggtcaaccgcaagctgcgccgcaagcccatgatcatcccggtggtc
ctcgaggcctga
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