Pseudomonas sp. NS1(2017): CI807_02010
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Entry
CI807_02010 CDS
T11105
Name
(GenBank) RNA polymerase subunit sigma
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
psns Pseudomonas sp. NS1(2017)
Pathway
psns02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
psns00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
CI807_02010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psns03021
]
CI807_02010
Transcription machinery [BR:
psns03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CI807_02010
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
Sigma70_ECF
HTH_23
Motif
Other DBs
NCBI-ProteinID:
ASV35001
LinkDB
All DBs
Position
complement(424364..424873)
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AA seq
169 aa
AA seq
DB search
MASSSSAHQVVGELYAQHHSWVVQLLRRKLGGQEQALDLAQDTFVRILSSGTVPIFREPR
AYLTTVASRLCGQYFRRQALERAYEQSLTTLEPEHMPSPETRLLVLEALDAVGQVLDGLS
SKVREIFLLSQLDGLTYPQIAERMDLSVNVVQKAMLKAYRHCYLAVYAA
NT seq
510 nt
NT seq
+upstream
nt +downstream
nt
atggcctcatcttcttctgcccatcaggtcgtgggcgaactctacgctcaacatcacagc
tgggtggtgcagttgctgcggcgcaagttgggcgggcaggagcaggccctggatctggcg
caggataccttcgtgcgtatcttgagcagcggcaccgtgccgattttccgtgagccgcgt
gcctacctcacgacggtcgcgagccgtttatgtgggcagtatttccgtcgccaggcactg
gagcgcgcctatgagcagtcgctgacgaccctcgaacccgaacacatgccttcgccggaa
acccgcttgctggtactcgaagcgctggatgccgtaggccaggtgctggacgggctgagc
agcaaggtgcgcgagattttcctgctctcgcagctcgatggcctgacttatccacagatc
gccgaacggatggacctcagcgtgaatgtggtgcaaaaggccatgctcaaagcctatcgc
cattgctacctggcggtgtacgcggcatga
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