Pseudomonas sp. NS1(2017): CI807_02630
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Entry
CI807_02630 CDS
T11105
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
psns Pseudomonas sp. NS1(2017)
Brite
KEGG Orthology (KO) [BR:
psns00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
psns03000
]
CI807_02630
Transcription factors [BR:
psns03000
]
Prokaryotic type
Helix-turn-helix
Other families
CI807_02630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
HTH_8
AAA_lid_14
PAS_4
AAA_5
HTH_50
HTH_7
HTH_AraC
HTH_17
PAS_9
HTH_23
RWP-RK
HTH_22
HVO_A0261_N
AAA_2
PAS_8
HTH_30
HTH_Tnp_1_2
PAS
Diguanyl_cycl_sensor
DUF1492
Xre-like-HTH
dnstrm_HI1420
AAA
HTH_IclR
nSTAND3
HTH_20
DUF7317
ANT
HTH_11
PAS_7
HTH_28
Motif
Other DBs
NCBI-ProteinID:
ASV35122
LinkDB
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Position
complement(560325..562214)
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AA seq
629 aa
AA seq
DB search
MHNDHFSRHAQQVLTVAHGRDPSSDPSIARSWLRCLEDYHLDPAQTIAPTVLEHGRLLES
RERLQQVLHIAGSEMNSLHQQLSGAGHAVLLTDARGVILNCVTAPSERKIFERAGLWLGA
DWSEACEGTNGIGTCLVERQSLTIHRDEHFRGRHTGLTCSASPVFDPHGDLLAVLDVSSA
REAVSRQSQFHTMALVNLSAKMIESCYFLRHFENHWLLRFHLQAESVGLFSEGLLAFDGE
GRICAVNQSALNLLGQRRDGLQGQPVEAFFDCSLDQLLGRASANATASWPLRTRDGRHLF
AALRGQARSASTPIAKPEPSRLPGICLGDSAMQNDFRKALRVFERDVPLLINGETGSGKE
AFAKAVHYASQRADQAFVALNCAAIPESLIESELFGYRGGSFTGARKEGMQGKLQQADGG
TLFLDEIGDMPLALQTRLLRVLEDRLVVPIGGEPQAVNVRVISATHRNLLERVQNGSFRE
DLYYRLNGLEVGLPPLRERRDRPQLLDFLLAEESAGQLVSLESGARQALLAFAWPGNVRQ
MRTVLRTVVALCDDGRIGLSDLPAVFRQASVQTVIKSPLEDAERQTLLATLDRQHWHMTQ
VAEHLGVSRNTLYRKLRKHGITRAAAGER
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgcacaacgatcatttcagccgccatgcccagcaagtcctcaccgtggcgcatggccgc
gacccgtccagcgatccgtccatcgcccgctcctggctgcgttgcctggaggactaccac
ctcgaccctgcgcaaaccattgcacccactgtgcttgaacatggtcgcttgctggaaagc
cgcgagcgcctgcaacaagtgctgcacattgccggcagtgagatgaacagcctgcatcaa
cagctctccggcgccgggcatgctgtgttgctcacggatgcacgcggtgtgatcctcaac
tgtgtcaccgcgccgtccgagcgcaagatcttcgagcgtgccgggttgtggctgggtgcc
gactggagtgaggcctgcgagggcaccaacggcatcggcacctgcctggtggagcgccaa
tccctgaccattcatcgtgacgaacacttccgtggtcggcataccgggctgacctgctcg
gcgagcccggtgttcgaccctcatggggatctgctggcggtgttggatgtgtcctcggcg
cgggaggcggtgtcgcgccaaagccagttccacacgatggcgctggtgaacctgtcggcg
aagatgatcgagagttgttacttcctgcgtcatttcgaaaaccattggctgctgcgtttt
catctgcaggcggagtcagtggggttgttcagcgaagggttgctggcgtttgatggagaa
gggcgcatctgtgcggtcaaccagagtgcgttgaacctgttggggcaacggcgtgacggg
ttgcaggggcagccagtagaggcatttttcgattgctccctggatcaattgctcgggcgc
gccagcgcaaatgccacggccagttggccgttgcgcacgcgggatggccggcatctgttc
gccgctttgcgtgggcaagcgcgcagcgcgtcaacccccatcgccaagcctgagccttca
cggctgcccggcatttgcctgggcgattcggcgatgcaaaatgattttcgcaaggcactg
cgggtgttcgagcgggatgtgccgctgttgatcaatggcgagaccggttctggcaaggaa
gcctttgccaaggccgtgcactacgccagccagcgcgctgaccaggcgtttgtggccctc
aactgcgccgccatcccggaaagcctgatcgaaagcgagctgttcggctatcgcggcggc
agctttaccggcgcgcgtaaggagggcatgcaaggcaagttgcaacaggccgatggagga
accttgttcctcgatgaaatcggcgacatgcccttggcgctgcaaacccgtctcttaagg
gtgctggaggataggctggtggtgccgatcggtggtgagccccaggcggtgaacgtcaga
gttatcagtgccactcaccgcaatttactggagcgtgtgcagaacggcagttttcgcgaa
gatctgtattaccgccttaacggcctggaggtcggcttgccgcctttgcgcgaacgccgt
gacaggcctcagttgctggacttcctgctggcagaagagtccgccgggcaattggtcagc
ctcgaatccggtgcgcgtcaggcgttgctggcgtttgcctggcccggcaatgtccgccag
atgcgtacggtattgcgcacagtggtggcgctatgtgatgacgggcggatagggctgtca
gatctgccggcggtgttccgtcaggcatccgtgcaaacggtcatcaagtcgcctctggag
gacgccgagcgccaaaccctactggcgacgctggatcgtcaacactggcatatgacgcaa
gtcgccgagcacttgggtgtcagccgcaataccttgtatcgcaagttacgtaagcatggg
atcacacgcgctgcggcaggggaacgttga
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