Pseudomonas sp. NS1(2017): CI807_03460
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Entry
CI807_03460 CDS
T11105
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
psns Pseudomonas sp. NS1(2017)
Pathway
psns02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
psns00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CI807_03460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psns03021
]
CI807_03460
Transcription machinery [BR:
psns03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CI807_03460
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMPIT
Motif
Other DBs
NCBI-ProteinID:
ASV35277
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Position
712747..714597
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AA seq
616 aa
AA seq
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MSGKAQQQSRIKELIVLGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFEA
APDKDSLMLADADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIE
IAKRIEEGIREVMGAIAHFPGTVDHILSEYTRVTTEGGRLSDVLSGYIDPDDGIAPPAAE
VPPPVDAKAAKADDDSEDDDAEASGDDEDEVESGPDPIIAAQRFGAVSDQMEITRKALKK
HGRANKQAIAELLALAELFMPIKLVPKQFEGLVERVRSALERLRAQERAIMQLCVRDARM
PRADFLRQFPSNEVDESWTDALAKGKAKYAEAIGRLQPDIIRCQQKLQALETETGLTIAE
IKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD
KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGRE
PTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATV
ESLKEATRDVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRK
LRHPTRSEHLRSFLDE
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgtccggaaaagcgcaacagcagtctcgtatcaaagagttgatcgttctcggtcgtgag
cagggttacctgacttacgcggaggtcaacgaccacctgcctgaggatatttcagatcca
gagcaggtggaagacatcatccgcatgattaacgacatggggatcaacgtattcgaagct
gcgccagataaggattcccttatgctggcggacgccgataccgacgaggctgccgctgaa
gaagcggctgccgcgctggctgctgtggagaccgatatcggtcgtaccaccgaccctgtg
cgcatgtatatgcgtgaaatgggtaccgtcgagctgctgacacgcgaaggcgaaatcgaa
atcgccaagcgtatcgaagagggcatccgtgaagtgatgggcgcaatcgcgcacttccct
ggcacggttgaccatattctctccgagtacacccgcgtcaccaccgaaggtggccgcctg
tccgacgtgctgagtggctacatcgacccggacgacggcattgcgccgcctgccgccgaa
gtgccaccgcctgtcgatgccaaggctgcgaaagcggacgacgactccgaagacgacgac
gctgaagccagcggcgacgacgaagacgaagttgaaagcggtccagacccgatcatcgct
gcccagcgtttcggtgcggtttccgatcaaatggaaatcacccgcaaggccctgaaaaag
cacggtcgcgccaacaagcaggccatcgccgagctgctggccctggctgagctgttcatg
ccgatcaagctggtgccgaagcaattcgaaggcctggttgagcgggttcgcagcgccctg
gagcgtctgcgtgcacaagagcgtgcgatcatgcagctctgtgtccgtgacgcgcgcatg
ccgcgtgccgacttcctgcgtcagttcccgagcaacgaagtagatgaaagctggaccgac
gcactggccaagggcaaggcgaaatacgccgaagccattggtcgcctgcagccggacatc
atccgttgccagcagaagctgcaagcattggagaccgaaaccggtctgacgattgccgag
atcaaggacatcaaccgtcgcatgtcgatcggtgaggccaaggcccgccgcgcgaagaaa
gagatggttgaagcgaacttgcgtctggtgatctccatcgccaagaagtacaccaaccgt
ggcctgcaattcctcgacctgatccaggaaggcaacatcggcttgatgaaggctgtggac
aagttcgaataccgtcgtggttacaagttctcgacctatgccacctggtggatccgtcag
gcgatcactcgctcgatcgccgaccaggcccgcaccatccgtattccggtgcacatgatc
gagacgatcaacaagctcaaccgtatttcccggcagatgttgcaggaaatgggtcgcgaa
ccgaccccggaagagctgggcgaacgcatggaaatgcctgaggataagatccgcaaggta
ttgaagatcgctaaagagccgatctccatggaaaccccgattggtgatgacgaagactcc
catctgggtgacttcatcgaagactcgaccatgcagtcgccaatcgatgtcgccaccgtt
gagagcctgaaagaagcgactcgcgacgtactgtccggcctcactgcacgtgaagccaag
gtactgcgcatgcgtttcggcatcgacatgaataccgaccacacccttgaggaagtcggt
aagcagtttgacgtgacccgtgagcggatccgtcaaatcgaagccaaggcgctgcgcaag
ttgcgccacccgacgcgaagcgagcatctgcgctccttcctcgacgagtga
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