Pseudomonas sp. NS1(2017): CI807_04285
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Entry
CI807_04285 CDS
T11105
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
psns Pseudomonas sp. NS1(2017)
Pathway
psns03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psns00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CI807_04285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psns03019
]
CI807_04285
Enzymes [BR:
psns01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CI807_04285
Messenger RNA biogenesis [BR:
psns03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CI807_04285
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ASV35430
UniProt:
A0A223VJL7
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All DBs
Position
888812..890698
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AA seq
628 aa
AA seq
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MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMN
PQVQAMSRGVDVLVACPGRLLDLCGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPAKRQNLLFSATFSQDITALAGKLLHNPERIEVTPPNTTVERIEQRVFRLAASHKRALL
AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVAIHGNKSQNARTKALADFKAGTV
RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTKQKIADGDLMGFDASAVEAEKPEARERPDVRNPRNPRGPKGDGPNGGGGGGG
RRDKGKDKGGKEKAPTNGRGERPAREQKPREGTPAREQRQPSQPPRAAADRAPDEFLDDD
VDNFGNRVDYVPQAKPAQGRGRRPGAPAQGAGTGAPRGGQPQGGRQNGPRNSSGGTTGTP
PAKRNGPRNGAPRDGQARREDSRSNNRRPARDDQPRSSEPAVQNPRGGPAPKIIHKESKA
DRFPTPEQLDQLPGRPRGEKPALLTRNR
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttagtccgcgccatcgaggcagcgggc
tataccgagcctactccggtgcaacagcgggccattcccgccgtgttgcaaggtcgcgac
ctgatggttgcggctcagacaggtactggtaaaaccggcggcttcgccctcccgattctg
gagcggttgttccccaacggtcacccggacaaatcccagcgtcatggcccgcgccaacca
cgcgtactggtcctgaccccaacccgcgaactcgccgcccaggtgcacgacagcttcaag
ctgtatgcccgcgacttgaagttcgtcagcgcctgcatcttcggcggtgtcggcatgaac
ccacaggttcaggccatgtcccgtggcgtcgacgtactggtggcctgccctggtcgcttg
ctcgacctgtgtggccaaggcagcgtcgacttgtcccacgtggaaatcctcgtgttggac
gaagccgaccgcatgctcgacatgggctttgtccatgacgtgaaaaaggtcctcgcccgc
ctgccggccaaacgtcagaacctgctgttctctgcaacgttctcccaggacatcactgcc
ctggccggcaagctgctgcacaatccggagcgcatcgaagtcacgccgccgaacaccacg
gtcgagcgtatcgagcaacgtgtgttccgcctggccgccagccacaagcgtgcgctgctg
gcccacctgatcaccgccggcgcgtgggaacaggtgctggtcttcacccgtaccaagcac
ggcgccaaccgcctggccgagtacctggacaagcacggcctcaccgccgtcgccatccac
ggcaacaagagccagaacgcgcgcaccaaggccctggctgacttcaaggccggcaccgta
cgcatcctggtcgccaccgatatcgctgcccgcggcctggatatcgatcagttgccacac
gtggtcaacttcgagctgccgaacgtcgatgaagattacgtgcaccgtatcggccgcacc
ggccgtgccggtcgttcgggtgaagccatctccctggttgcgccggacgaagaaaaactg
ctgaaaagcatcgaacgcatgaccaagcagaaaatcgccgacggcgacctgatgggcttc
gacgccagcgccgttgaggccgagaagcctgaagcgcgcgagcgtccggacgtgcgcaac
ccgcgcaacccacgcggtccgaagggcgatggcccgaacggtggcggcggcggcggcggt
cgtcgcgacaagggcaaggacaaaggcggtaaggaaaaagcgcccacaaatggccgtggc
gagcgtccagcccgcgagcaaaagccacgtgaaggtaccccagcccgcgaacagcgccag
ccgagccaaccgccacgcgccgctgccgaccgtgcaccggacgagttcctcgacgacgac
gtggataacttcggtaaccgcgttgactacgtgccacaggccaaaccggcccaaggccgt
ggccgtcgtccaggtgctccggcacagggcgctggcactggcgctccacgtggcggccag
ccacaaggtggtcgccagaacggcccgcgcaacagcagcggcggcaccaccggtacgcca
cctgccaagcgcaacggcccgcgtaacggtgccccccgtgacggccaggctcgccgcgaa
gactcgcgcagcaacaaccgtcgcccagcccgtgacgaccagcctcgctcgtccgaaccg
gccgtgcagaacccacgcggtggcccggcgccaaagatcatccacaaggagtcgaaggcg
gatcgcttcccgacacccgagcagttggatcaactgccaggccgtcctcgtggtgaaaag
ccagcactgctgacccgcaaccgctga
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