Pseudomonas sp. NS1(2017): CI807_05860
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Entry
CI807_05860 CDS
T11105
Name
(GenBank) type IV secretion protein Rhs
Organism
psns Pseudomonas sp. NS1(2017)
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Gene cluster
GFIT
Motif
Pfam:
RHS_repeat
DUF6531
RHS
PAAR_motif
TEN_YD-shell
Motif
Other DBs
NCBI-ProteinID:
ASV35722
UniProt:
A0A223VK43
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Position
1206764..1211149
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AA seq
1461 aa
AA seq
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MSDALWAARMGDALSHTSMMADILGGVLEVAANIAITAVATAAVVAATGITVATGGLGCF
LLGAVVGTIVGLAMSKTGADKGLTNLCDTFANALFPPTVQANILTGATDTLTNNIPAARA
AGAISSHVAPAGTELEEPTPEAEASYLDMAESFFSQMWRPTVATPAPGAVPKPLDLVVCM
KHPPMPPQFLAEGSDKVTINGQPAVRSGDRSTCDATVVSSGLISSNVTIGGGSVVVREIR
SGKTPGVGLAVTALLMLKGGKGKFFSKLPCMLIGGATSMAVSSAMGAVANAAMGSSNPVH
AATGAKVLGDAEELDFVLPGILPIDWQRFYNSRDERSGGMFGAGWSVPYEVCVEILPHSE
GGETLIYTDEQGRPIDMGSIPLGGAVFSAGEGLAVRRHLNGQLLIESDEGLYRLFEPTAD
PSLLRLTQLGDRNDNRIHVDYDEAGRLVRLRDTFDLVQVELIHDQGQLARIERLYPDQRR
EVLVSYGFDTAGNLAEVRDATGQVQRRFAYDSGRRMVEHQLPTGLRCFYEWSLVEGLEWR
VVRHWTDEGDAYQFDYDLQAGITRITDGLQRVSTRHWNTQHQIIRYSDNLDHTWLFEWND
ERQLLSATDPQGGRFEYSYDEAGNLIGETDPLGRSDSTLWLEHWALPLVETDAADNSWHY
RYDSRGNCIAETDPLGYITRYRYDAHGQPVEIIDATGKSKKLRWNPFGQLAEHIDCSGYP
SRFSYDERGYLQVITDALGERTQFSYDAQGRLLTTQLPDGRTEHYQRDVSGHLVGYTDPA
GHTTLYQHNRRGQVRQRTDAHGRQVQFGYDSYGRLQALINENGERYRFAWDAGDRLVEQQ
DLDGSAKLYSYDPLDNVAAVTAVPAPYGNGLALVPETPPAPIVHRLERDAVGRLIAKTTD
DGRTDYSYDAVDQLTAVTFTDSQGNAQALGFAYDALGQLLCEQSSAGNLQHHYDELGNLI
QTQLPDGRWLNRLHYGGGHLHQINLDGQVISDFERDRLHREVLRTQGQLTTRSEYDRSGR
LRSRQRRLASQPSLMPAAAQKQFEYDPADNLIGKLDQQPAAQHRQLLHYDATGRIIASQD
SLHGQRETFAYDAAANLLDGPQAGAGLVVHNKLLTYQDKRYRYDAFGRIIEKRSAKRGVQ
RFAYDAESRLIEVRNDDGSVVRMTYDPLGRRIEKTEHGSDGYPLGETQFVWDGLRLLQEH
KHSQTSLYVYDDDGYEPLARVDGMGPLQKIRYYHNDLNGLPEQLTETDGHSVWQATYRVW
GNTLEEVREPYYIEEQNLRFQGQYLDRETGLHFNTFRFYDPDVGRFTTPDPIGLLGGLNL
YSYGANPITWLDPLGWTPTPLNKPGFYVYGLYAPGAKTPYYIGHTEQDPAARESQHDRST
RLGKGELRVLKGQDGKMTYSQAKGYEQAYREKYKTKGKFPGNVIEPINKSRTDARGKSHY
KNYRAAAKALGIKPSKIKSCT
NT seq
4386 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacgcgttatgggcggcccggatgggcgatgcgctctcccacacctcaatgatg
gcggacatccttggcggcgtgctggaggtagcggccaatatcgcgatcaccgccgtggcg
accgccgccgtggttgccgccaccgggattaccgtcgcgaccggagggcttggctgcttc
ctgctgggtgccgtagtgggcacgattgtcggcctggccatgagcaagaccggggcggac
aagggcctgacgaatttatgcgataccttcgccaacgcactgttcccgcccacggtgcag
gccaatattctcaccggcgccaccgacactctcaccaacaacatcccggccgcccgcgcc
gccggggcgatcagttcccatgtcgcgccagccggcaccgagctggaagaacccacgcct
gaagcagaagccagctatctggacatggccgagagtttcttctcgcagatgtggcgtccc
acggttgcgacacccgctcccggcgccgtgcccaagccgctggacctggtggtgtgcatg
aagcacccgcctatgccgccgcaattcctggccgagggctcggataaggtcacgatcaac
ggccaaccggcagtgcgcagcggtgatcgcagcacctgcgatgcaacggtggtgtcgtcc
ggcctgatttcctccaacgtgaccattggcggcggctcggtggtggtgcgcgagattcgc
agtggcaagacgccgggcgtggggctggcggtcacggcgctgttgatgctcaagggtggc
aagggcaagttcttcagcaagttgccgtgcatgctgatcggcggggccacgtcgatggcc
gtcagcagcgcgatgggggccgtggcgaacgcagcgatgggctcgtcgaacccggtgcat
gcggccacaggcgcgaaggtgctaggcgatgccgaggagctggatttcgtactgcccggc
atcctaccgatcgactggcagcgcttctacaacagccgcgatgagcgctcgggtggaatg
ttcggtgcaggctggagcgtgccctatgaagtgtgcgtcgagatcctgccccattcagag
ggcggtgaaacgctgatttataccgacgagcaaggtcgacctatcgacatgggctccatc
cccctgggcggtgccgtgttcagcgcgggtgaagggctggccgtgcggcggcatctcaat
gggcagctgttgatcgagagcgatgagggcttgtatcgcttgttcgagcccactgccgac
ccatcgctgctgcgcctgactcaactgggcgaccgtaacgacaaccgcatccatgtcgac
tacgacgaagccggtcgcctggtgcggctgcgtgatacgttcgatctcgtgcaggttgag
ttgatccatgatcaaggccagttagcgcgcatcgaacgtctataccccgaccagcgccga
gaagtgctcgtcagctacggcttcgacacagcggggaacctggctgaagtgcgtgatgca
acgggccaggttcagcgtcgtttcgcctacgacagtggtcgcaggatggtggagcaccaa
ctgccgaccgggcttcgttgcttctacgaatggtctttggttgaaggtttggaatggcgc
gtggtccggcactggaccgatgagggcgacgcttaccagttcgactatgacttgcaggcc
ggtatcacccgtattaccgacggcttgcaacgcgttagtacccggcattggaacacccaa
caccagatcattcggtacagcgacaaccttgaccacacctggctgttcgaatggaacgac
gagcgccagttgctgagcgccaccgaccctcagggcgggcgctttgagtacagctacgat
gaggccggcaacctgatcggcgaaaccgacccgctgggccgcagcgattcgactttatgg
ctggagcattgggcgctgccactggtggaaaccgatgccgccgacaacagctggcactat
cgctatgactcacgcggcaactgcatcgccgaaaccgatccgctgggctatatcacccgt
taccgctacgacgcccacggccagcccgtggaaatcatcgacgccaccggcaaaagcaaa
aaactgcgctggaaccctttcgggcaattggccgagcacatcgactgctcgggttacccc
agccggttcagctacgacgagcgcggctatctgcaggtcatcaccgatgccctgggtgag
cgtacccaattcagctatgacgcccaggggcgtttgctcaccacccaattgccagacggc
cgtaccgagcactatcagcgtgatgtcagcggtcatctggtgggttacaccgacccagcc
ggacacaccacgctctatcaacacaaccgccgtggccaagtccgccaacgcaccgacgcc
catggccggcaggtgcagttcggctatgacagctatggacggctgcaagcgctgatcaac
gaaaacggcgagcgttatcgttttgcctgggatgccggcgaccgtctggttgaacagcag
gacctcgacggcagtgccaagctctacagctatgacccgctggataacgtcgcggcggtg
actgccgtgccggcgccttacggaaacggtctggccctggtgcccgaaacgccgcccgcg
cctatcgtccatcgattggaacgcgatgcagtgggccggctgattgccaagaccaccgac
gatggccgcaccgactacagctacgacgcagtggaccagctcacggctgtcaccttcacc
gactcgcagggcaacgcccaagccctgggttttgcctacgacgccctcggccaactgctt
tgcgagcagagttcagcgggcaacctgcaacatcattacgacgagctcggcaacctgatc
cagacccaactgccggacggccgctggctcaatcgcctgcactacggcggtggccatctg
caccagatcaacctcgacggccaggtcatcagcgacttcgaacgcgaccgcctgcaccgc
gaagtactgcgcacccagggccagctcaccactcgcagcgaatatgaccgaagtggccgc
ctgcgttcgcgccaacgccgcttggcaagtcagccctcgttgatgccagcggccgcgcaa
aagcagttcgaatacgaccccgccgacaacctgatcggcaaactcgaccaacaacccgcc
gcgcagcaccgccaactgctgcactacgacgccaccggtcgcatcatcgccagccaggac
agcctgcacggccagcgtgaaaccttcgcctacgacgccgccgccaacctgctcgacggc
ccgcaggcgggtgccgggttggtggtgcataacaagttgctgacctatcaggacaagcgt
tatcgctatgatgcgtttgggcggattatcgaaaagcgcagcgcgaaacggggtgtgcag
cggtttgcctacgatgctgaaagccgcttgattgaagtgcgtaacgatgacggcagcgtc
gtgcgaatgacctacgacccgctgggccgacgcatcgaaaaaaccgagcatggcagtgac
gggtatccgctgggagaaacgcagtttgtgtgggatggactgcggttgttgcaggagcat
aaacacagccagaccagcctctatgtttatgacgatgacggctatgaaccgctggcccgc
gtcgacggcatgggcccgttgcagaagattcgctactaccacaacgacctgaatgggttg
ccggaacaactgaccgagaccgatgggcacagcgtctggcaggcgacttatcgggtgtgg
ggcaacacgctggaggaagtgcgcgagccttattacattgaagagcagaatctgcggttc
caggggcagtatctggaccgggagacggggctgcatttcaatacgttcaggttttatgat
ccggatgtggggcggtttactacgccggatccgattgggttgctgggtggcctgaacctc
tactcgtacggtgcaaaccctattacctggctggatccactaggctggaccccaacgccc
ctaaacaaacctggtttctatgtttacgggctctacgcccccggtgctaaaacgccttac
tacatcggtcacaccgagcaggatcctgcggcgcgtgaaagtcagcacgacaggtccacg
cggcttggaaaaggagagctgcgtgtgttgaaaggtcaggacggcaagatgacttactct
caagccaaaggttacgaacaggcctaccgagagaaatacaaaacaaaaggcaaattcccc
ggcaatgtcatcgaacccatcaataaaagccgcactgatgcacggggcaaaagtcactat
aaaaactacagggctgcggccaaagcgctgggcatcaagccgagcaaaatcaaatcttgt
acctaa
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