KEGG   Pseudomonas sp. NS1(2017): CI807_07115
Entry
CI807_07115       CDS       T11105                                 
Name
(GenBank) RNA polymerase subunit sigma
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
psns  Pseudomonas sp. NS1(2017)
Pathway
psns02020  Two-component system
Brite
KEGG Orthology (KO) [BR:psns00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    CI807_07115
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:psns03021]
    CI807_07115
Transcription machinery [BR:psns03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     CI807_07115
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_r4 PhyR_sigma-like HTH_23 HTH_31 Sigma70_ECF HTH_3 HTH_24 HTH_Tnp_4 Rv2175c_wHTH HTH_7 HTH_38 HTH_17 HTH_Tnp_ISL3 HTH_11 Fe_dep_repress HTH_40 MarR_2 HTH_36 HTH_IclR GerE PCI TnsD
Other DBs
NCBI-ProteinID: ASV35961
LinkDB
Position
1477323..1477832
AA seq 169 aa
MDSATDGQQQLHLLYRDHHGWLQGWLRKRLGDREHAADVAQDTFLRLLVSGRFPGDKESR
SYLAQIARNLVIDQWRRLRIERAYLESIAHLPEPESPSLETRALILETLMQIDAMLDRMP
DNVRQAFLLSQFEGLSYAQVAERLGVSVSSVQKYMTRAIVACYQVAYAE
NT seq 510 nt   +upstreamnt  +downstreamnt
atggacagcgcgactgacggccagcaacagcttcacctcctgtaccgcgaccatcacggc
tggctgcaaggctggctgcgcaagcgcctgggcgatcgcgagcatgcggctgacgtggcg
caggacaccttcctgcgcctgctggtgtccgggcgctttcccggcgacaaggaaagccgc
agctacctggcgcagatcgcgcgcaacctagtgatcgaccagtggcgccgcctgcgcatc
gagcgcgcctacctggaaagcatcgcgcacctgcccgagccggaatcgccgtccctggaa
acccgcgcactgatcctcgaaacgctgatgcagatcgacgccatgctcgaccgcatgccc
gataacgtgcgccaggcgtttttgctgtcgcagttcgaaggcctgagttacgcacaggtc
gctgagcgcttgggcgtctccgtcagctcggtgcagaagtacatgacccgcgccatcgtc
gcttgctaccaagtggcctacgccgaatga

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