Pseudomonas sp. NS1(2017): CI807_13300
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Entry
CI807_13300 CDS
T11105
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
psns Pseudomonas sp. NS1(2017)
Pathway
psns03030
DNA replication
psns03430
Mismatch repair
psns03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psns00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CI807_13300
03430 Mismatch repair
CI807_13300
03440 Homologous recombination
CI807_13300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psns03032
]
CI807_13300
03400 DNA repair and recombination proteins [BR:
psns03400
]
CI807_13300
Enzymes [BR:
psns01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CI807_13300
DNA replication proteins [BR:
psns03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CI807_13300
DNA repair and recombination proteins [BR:
psns03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CI807_13300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
HROB
Motif
Other DBs
NCBI-ProteinID:
ASV37116
UniProt:
A0A223VP42
LinkDB
All DBs
Position
2816337..2819858
Genome browser
AA seq
1173 aa
AA seq
DB search
MPASFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAG
IKPICGADLWLSNKDPDNALSRISLLAMNGVGYRNLTELISRGFIDGQRNGSIIIEREWV
AEASEGLIMLSAAKEGEIGIALLGGNPQEAEVLAKEWMQVFPDRFYLEVQRTNRPNDEEH
LHAAVALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKNYSEEQYLK
SADEMAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFDGL
EERLTVLLPKDTTEDYDAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKSNGVPV
GPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEYV
AEKYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQE
EILRDFIKIDEEAAEIWDMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEGDGLV
TQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLDIAFIPLDDKPTYT
LLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR
AELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE
EMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKAHY
PAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASEFKFTVNDEGRIIYGLGAI
KGVGESPVEAIVEARQSGPFADLFDFCARVDLKRINKRTLDGLIRSGALDRLGPYFHDEP
KAYQANIDRNRAVLLTAMEEAIKAAEQTARTHDSGHADLFGGLFVEEDADVYGNHRKAKE
LTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDTQTVAGMIIALRVM
KNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGEVSNDDFSGGLRLR
IKRVMSMEDARTNLAESLRLKVKTEALKGDQLRWLGDLLKRHRGACPVTMEYTGSDAKAM
LQFGETWRIDPADGLIQALRDQFGRDNVFLQYR
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgccggcttcattcgttcacctacgcctgcacactgaatactccctggtcgacggcctg
gtacggatcaaaccgctggtcaaaaccctggtgggcatgaacatgcctgcggtcgcggtg
accgatcagaacaacatgtgttccctggtcaagttctacaagaacgccatgggcgccggc
atcaagccgatctgcggcgccgacctgtggctgtccaacaaagatccggataatgcactt
agccgcatcagcctgttggcgatgaacggcgtgggttaccgcaacctcactgaactgatt
tctcgtggtttcatcgacggccagcgcaatggctcgatcatcatcgagcgcgaatgggtc
gccgaggcgagcgaaggcctgatcatgctgtcggccgccaaagagggcgagatcggtatc
gcgctgctgggtggcaatcctcaagaagccgaagtactcgccaaggagtggatgcaggtc
ttccccgatcgtttctacctggaagtccagcgcaccaatcgccccaacgacgaagaacac
ctgcacgccgccgtggccttggccgataagctgggcgcgccgctggtcgcaaccaacgat
gtgcgcttcatcaagaaggaagatttcgaggcccacgaaacccgcgtgtgcatcggcgaa
ggccgggccctggatgacccgcgccgctcgaagaactacagcgaagagcagtaccttaaa
agcgccgacgaaatggccgagctgttcagcgacctgcccgaggccctggaaaactctgtc
gaaatcgccaagcgctgcaacattgaagtgaagctgggcaagcacttcctgcccaacttt
ccgattcccgatggcatgaccatcgacgagtacttccgcaaggtgtctttcgacggcctc
gaagagcggttgactgtcctgctgcccaaggacaccaccgaagattacgatgccaagcgc
caggtctacgtcgatcggctgaatttcgagctggatatcatcatccagatggggttcccc
ggttacttcctgatcgtaatggactttatccagtgggccaaaagcaacggcgtgccggta
ggtccaggccgggggtcgggtgccggctcgctggtggcctatgtgcagaagattaccgac
ctcgatccgctggaatatgacctgctgtttgaacggttcctgaacccggaacgggtttcc
atgcccgacttcgacgttgacttctgcatggacggccgtgaccgcgtgatcgaatacgtg
gccgagaaatatggccgcaacgcggtgagccagatcatcaccttcggttccatggcggcg
aaagctgtaatccgtgacgtggcgcgggtgcagggcaagtcctacggcctggcggaccgc
ttgtcgaagatgatcccgttcgaagtcggcatgaccctggaaaaagcctacgagcaggaa
gaaatcctgcgcgacttcatcaagatcgatgaagaagccgccgaaatctgggacatggcg
cgcaagcttgaaggcgtggtgcgtaacgtcggtaagcacgccggtggtgtggtgattgcc
ccgacgaagctcaccgacttttcgccgatctactgtgacgaagaaggcgacggcctggta
acccagttcgacaaggacgacgtggaggcggccggcctggtgaagttcgacttcctcggg
ctgcggaccctgacgatcatcgactgggcgctcaagaccatcaaccgcgaccgcgccaag
gtcaacgaagaaccgctggatatcgcgtttattccgctggacgacaaaccgacttacacc
ttgctgcaaaaagccgaaaccacggcggtgttccagcttgagtcgcggggtatgaaagag
ctgatcaaaaagctcaaacccgactgcctggaagacttgatcgcactggtggccctgttc
cgtccgggcccgctgcaatcgggcatggtggacgacttcatcaaccgtaagcacggtcgc
gccgaactggcgtatccgcactcggactaccagtacgaaggcctcaagccggtgctggct
ccgacctacggcatcatcctgtatcaagaacaggtgatgcagatcgcccaggtgatggcc
ggttacaccctgggtggcgcggacatgctgcgtcgcgccatgggtaagaaaaagcccgag
gaaatggccaagcagcgcggcggtttcatcgaaggttgcgccaccaacaatatcgacgcg
gacctggcgggtaacatcttcgacctggtggaaaagttcgccggttatggcttcaacaaa
tcccactcggccgcctacggcctggtgtcgtaccagactgcctggctgaaagcccactac
ccggcgccgttcatggccgcggtactctcggcggatatgcacaacaccgacaaggtcgtg
accttgatcgaggaagtgcgcaccatgaagctgcgccttgacgcgccggacgtgaacgcc
tctgagttcaagttcacagtgaacgacgaaggccgcattatttatggcctgggcgcgatc
aaaggcgtgggcgaaagcccggtggaagctatcgtcgaagcgcgtcagagtgggccgttc
gccgacctgttcgacttctgcgcgcgggtcgacctcaaacgcattaacaagcgcaccctc
gacggcctgatccgcagcggcgcacttgaccgtcttggcccgtatttccatgatgagccg
aaggcttaccaggcaaatattgatcgcaatcgtgcggtgctgctcaccgcgatggaagaa
gcgatcaaggccgccgaacagaccgcccgcacccatgacagcggccacgccgacctgttt
ggcgggttgttcgtcgaagaggacgcggacgtctacggtaaccaccgcaaggccaaggag
ctgaccctcaaggagcgcctcaagggtgagaaagacaccttgggcctgtacctcaccggt
cacccgattgatgaatacgagggcgagatccgccgtttcgcccgtcagcgcatcatcgac
ctgaagcctgcgcgggatacccagaccgtcgccggcatgatcatcgccctgcgggtgatg
aagaataaaaagggcgacaagatggggttcatcaccctcgacgaccgctcgggccgcatt
gaggcctcgctgtttgccgacgcattccattctgcgcagtcgctgttgcagaccgatgcg
atggtggtggtggaaggggaggtcagcaacgatgacttctccggtggcctgcgcctgcgg
atcaaacgggtgatgagcatggaggatgcgcgcaccaatctggccgaaagcctgcgcttg
aaggtgaaaaccgaagcactcaagggcgatcagctacgctggttgggtgatttgctcaag
cgccaccgtggcgcgtgcccggtgaccatggagtacaccggcagcgacgccaaggccatg
ttgcagtttggcgagacttggcgaattgatccggctgatggcttgattcaagctttgcgt
gaccagttcgggcgagacaacgtcttcctccaataccgttga
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