Pseudomonas sp. NS1(2017): CI807_14690
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Entry
CI807_14690 CDS
T11105
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
psns Pseudomonas sp. NS1(2017)
Pathway
psns03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psns00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CI807_14690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psns03400
]
CI807_14690
Enzymes [BR:
psns01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CI807_14690
DNA repair and recombination proteins [BR:
psns03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CI807_14690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ASV37379
UniProt:
A0A223VR96
LinkDB
All DBs
Position
complement(3109936..3113385)
Genome browser
AA seq
1149 aa
AA seq
DB search
MPVLRLPLLPAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSF
FAPDLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELAHGVLVVPITTALHRLAPT
KFLLGSSLVLDIGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKPPY
RIDLFDDEIETLRTFDPENQRSIDKVDSVKLLPAREFPLQKDAVTRFKARFRERFDVDFR
RCPIFQDLSSGITPAGIEYYLPLFFDETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYEERRVDPSRPLLPPAELFLPVEDCFARLKSWPRVVASQQDVETGVGRERFPAGTLPDL
AIQAKATQPLEALSNFLGDFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFVKS
KERLAITIAPLDEGLLLDDPALALIAESPLFGQRVMQRRRREKRADANNDAVIKNLTELR
EGAPVVHIDHGVGRYLGLQTLEIDNQAAEFLTMEYAEGAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGFA
FEETPDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVPT
TLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAIADLAEGKIDIVIGTHKLLSDDV
KIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARI
AIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQITSDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGDGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLDQPLGGGPEINLRLPALIPEDYLP
DVHARLILYKRIASATDEEGLKDLQVEMIDRFGLLPEPTKNLVRLTLLKLQAEQLGIKKV
DAGPQGGRIEFEAQTPVDPLVLIKLIQGQPNRYKFEGATLFKFMVPMERAEERFNTLEAL
FERLIPKSA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgtcctgcgtctaccgcttctccctgctgcggcaggtaaacagcactggggcaac
ctgcccggtgccgccctgagcctggccatcgccgaggctgccagcgcagccaagcgtttt
accctgctgctcaccgccgacagccaaagcgccgaacggttggagcaggagctgagcttc
ttcgcccccgatttgccggtgctgcatttcccagactgggaaaccctgccctacgacctg
ttctcgccgcaccaggacatcatctcccagcgcatcgccagcctgtaccgcttgccggaa
ctggcccacggcgtgctggtggtgccgatcaccacggccttgcatcgcctggcgccgacc
aagttcctgctgggcagcagcctggtgctggatatcggccagaagctggacgtcgagcag
atgcgcacgcgcctggaagccagcggctatcgctgcgtcgacacggtgtacgagcacggt
gagttcgcggtgcgtggcgcgctgatcgacctgttcccgatgggcagcaaaccgccctac
cgaatcgacctgttcgatgacgaaatcgagaccctgcgtaccttcgatccggaaaaccaa
cgttccatcgataaagtcgactcggtcaagctgctgcctgcgcgggaattcccgctgcaa
aaagacgcggtgacccgcttcaaggcgcgcttccgtgaacgcttcgacgtcgacttccgc
cgttgcccgatcttccaggacttgagcagcgggattacaccggccggtatcgagtactac
ctgccgctgttcttcgacgaaacctccaccctcttcgattacctgccccaggacacccag
gtgttttcgctgccgggcatcgaacaggcggcggaaaatttctggaacgacgtgcgcaac
cgctatgaagagcgtcgcgtcgatccgtcccgtcctttattgccgcccgccgaactgttc
ctgccggtggaagactgcttcgcgcgcctgaaaagctggccgcgtgtagtcgccagccag
caggatgtggaaaccggcgttggccgcgaacgcttcccggcaggaacactgccggatttg
gcgatccaggccaaagccacgcaaccgctggaagcgctgtccaacttcctcggcgatttc
cctggccgcgtgctgtttaccgccgaatctgctggccgtcgcgaagtgctgctggaactg
ctcgaacgcctgaagctgcgcccgaaaaccgtcgacagctggccggattttgtcaaaagc
aaagagcgcctggcgatcaccatcgcgccgctggacgaaggcctgttgctggatgatccg
gccctggcgctgatcgccgaaagcccgttgttcggtcagcgcgtgatgcagcgtcgtcgc
cgcgaaaaacgcgccgacgccaacaacgatgccgtgatcaaaaacctcaccgaactgcgc
gaaggcgcgccggtggtgcacatcgaccacggcgtcggccgctacctgggcctgcagacc
ctggagatcgacaaccaggccgccgaattcctcaccatggaatacgccgagggcgccaag
ctctacgtgccggtggccaacctgcatttgattgcgcgctataccggcagcgatgacgcc
ctggcgccgttgcatcgcctgggttcggaaacctggcagaaagccaagcgtaaagccgcc
gagcaggtgcgcgatgtcgccgccgaactgctcgacatctatgcccgccgcgccgcccgc
gaaggttatgcgttcgccgacccgaaagccgactacgccaccttcagcgccggcttcgcc
ttcgaagaaaccccggaccagcaaaccaccatcgaagcggtgcgcgccgacatgctcgcg
cccaagccgatggaccgcctggtctgcggcgatgtgggcttcggcaagaccgaagtggcc
atgcgcgccgccttcattgccgtgcacggcggtcgccaggtagccatcctggtgccgacc
accctgctcgcccagcagcattacaacagtttccgcgaccgctttgccgattggccggtg
accgtggaagtgatgagccgcttcaagtcggccaaggaagtgaatgccgccatcgccgat
ttggccgaaggcaagatcgacatcgtgatcggcacccacaagctgctgtcggacgatgtg
aagatcaagaacctgggcctggtgatcatcgacgaagaacaccgctttggtgtgcgccag
aaggaacagctcaaggccctgcgcagcgaggtcgacatcctcacccttaccgccacgccg
attccgcgcacgctgaacatggccgtgtcgggcatgcgcgacctgtcgatcatcgccacg
ccgccggcgcggcgcttgtcggtgcgcaccttcgtgatggagcagaacaaaagcacggtc
aaggaagcgctgttgcgtgaactgctgcgcggtgggcaggtgtactacctgcacaacgac
gtgaagaccatcgagaaatgcgccgccgacctcgccgagctggtgccggaggcacgtatc
gccatcggccacgggcaaatgcgcgagcgcgaactcgaacaggtgatgagcgacttctat
cacaagcgcttcaacgtgctgatcgcctcgaccatcatcgagaccggtatcgacgtgccg
agcgccaacaccattattatcgagcgcgccgacaagttcggcctggcccagttgcaccaa
ctacgcggtcgcgtggggcgcagtcaccaccaggcgtacgcctatttgctgacgccgccg
cgccaacagattacctccgacgcggaaaagcgcctggaagcgatcgccaacacccaggat
ctgggcgccggctttgtgctggccaccaacgacctcgaaatccgtggcgccggcgaacta
ctgggcgacggccagagcgggcagatccaggcggtcggtttcacgctgtacatggagatg
cttgaacgtgccgtgaaagccatccgcaaaggcgaacagccaaatctggatcaaccgttg
ggcggcggccctgagatcaacctgcgcttgccggcgttgattcccgaggattacctgccg
gatgtgcatgcacgactgatcctgtacaaacgcatcgcctcggccaccgatgaagaaggc
ctcaaggacctacaggtcgagatgatcgaccgcttcggcctgttgccggaaccgaccaag
aacctggtgcgcctgaccttgctgaaattgcaggccgagcagctcgggatcaaaaaggtc
gacgccgggccgcagggcggacgcatcgaattcgaagcgcagacgccggtggacccgttg
gtgctgatcaagctgatccaaggccagcccaaccgctacaagttcgaaggggctacgctg
ttcaagttcatggtgccgatggaacgtgccgaagaacgctttaataccttggaggcgttg
ttcgaacgcctcatcccgaaatctgcttga
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