Pseudomonas sp. NS1(2017): CI807_15685
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Entry
CI807_15685 CDS
T11105
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
psns Pseudomonas sp. NS1(2017)
Pathway
psns03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psns00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CI807_15685
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psns03019
]
CI807_15685
03009 Ribosome biogenesis [BR:
psns03009
]
CI807_15685
Enzymes [BR:
psns01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CI807_15685
Messenger RNA biogenesis [BR:
psns03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CI807_15685
Ribosome biogenesis [BR:
psns03009
]
Prokaryotic type
rRNA helicases
CI807_15685
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
BscB_a-b
Motif
Other DBs
NCBI-ProteinID:
ASV37567
UniProt:
A0A223VQN3
LinkDB
All DBs
Position
3302728..3304401
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AA seq
557 aa
AA seq
DB search
MTQETGGFAAFNLNPNILAAVAATGYEEPSAIQQQSIPIIMAGKDMIGQAQTGTGKTAAF
ALPILQCIDPAKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEMLKLGFMDDLEVIFKALPPT
RQTVLFSATLPQSIRAIAERHLRDPEHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGDLLDRLTADIGCTPRAL
AAALLRKATNGQALTLAAIEKERPLVPNSAPRGDRPERTGDRPDRGDRERRAPVPLAEGR
ARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLEKLLAKLK
DTRVAGKQLKLRRYRED
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaaccggcggcttcgccgcttttaatctgaacccgaatattcttgcagcc
gtcgcagcgaccggctacgaagagccttcggcgattcagcagcaatcgatcccgatcatc
atggccggcaaggacatgattggccaggcgcaaaccggtaccggcaaaactgccgcgttc
gctttgcctatcctgcagtgcatcgatcctgccaagcgcgaaccgcaagccctgatcctg
gcgccaacccgtgagttggcgctgcaagtagcaaccgcttttgaaacctacgccaagcaa
atgccaggcgtaaccgttgtggccgtttacggcggcgcgcctatgggcccacaactgaaa
gcaatccgtaatggcgcacagatcgttgtcgccacgccgggccgtctgtgcgaccacctg
cgtcgtgacgagaaagtcctgtcgaccgtgaaccacctggttctggacgaagccgacgaa
atgttgaagctgggcttcatggatgacctggaagtcatcttcaaggcactgccaccgacc
cgtcagaccgtgctgttctcggccaccctgccacagtcgatccgtgccatcgccgagcgt
cacctgcgcgatccagagcacgtgaagatccagaccaagactcagaccgttaccgcgatc
gaacaggctcacctgttggttcacgctgaccagaagacctcggctgtattgagcctgctg
gaagtcgaagacttcgacgccctgatcatgttcgtgcgcaccaagcaagcgaccctggac
ctggccagtgccctggaagccaaaggctacaaagccgctgcgctgaacggtgacatcgcc
cagaaccaacgtgagcgcgtgatcgattccctcaaggatggccgtctggacatcgttgtg
gcgaccgacgttgctgcccgtggccttgacgttccacgtatcacccacgtgttcaacgtt
gacatgccgtacgatccagagtcctacgttcaccgtatcggccgtaccggccgtgcgggt
cgcgaaggtcgtgcactgctgctggtgactccacgtgagcgccgcatgctgcaagtgatc
gagcgtgtaaccggtcagaaagtggccgaagtccgcctgccggatgcccaggccgttctc
gatgcgcgcatcaagaaactgaccaacagcttgtcgcctctggtggctgacgctgagtcg
acccacggcgacctgctggaccgcctgaccgccgatatcggttgcaccccgcgtgccctg
gctgcagccctgctgcgcaaggcgaccaacggtcaagccctgaccctggccgccatcgag
aaagaacgtccactggtgccgaacagcgcgccacgcggtgatcgtccagagcgtactggc
gaccgtccagaccgtggtgatcgtgagcgtcgtgctccggtgccattggctgaaggccgt
gctcgttgccgtaccgcgctgggcgcgcgtgatggtatcgctgccaagaacctgctgggc
gctatcctcaacgagggtggcctggcacgtgaagccatcggtcgcatccaggtccgtgac
agcttctccctggtggagctgccggaagacggtctggaaaaactgctggccaagctgaaa
gacactcgcgttgccggtaagcagctgaagctgcgtcgctaccgcgaagattga
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