KEGG   Pseudomonas sp. NS1(2017): CI807_16500
Entry
CI807_16500       CDS       T11105                                 
Name
(GenBank) RNA polymerase subunit sigma
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
psns  Pseudomonas sp. NS1(2017)
Pathway
psns02020  Two-component system
Brite
KEGG Orthology (KO) [BR:psns00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    CI807_16500
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:psns03021]
    CI807_16500
Transcription machinery [BR:psns03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     CI807_16500
SSDB
Motif
Pfam: Sigma70_r2 Sigma70_r4_2 Sigma70_r4 Sigma70_ECF PhyR_sigma-like HTH_23 HTH_28 GerE HTH_Tnp_ISL3 HTH_40 HTH_11 Phage_antitermQ HTH_29 DUF722 HTH_24 DUF1492 Terminase_5 Phage_NinH HTH_Mga HTH_7 Homeodomain
Other DBs
NCBI-ProteinID: ASV37714
LinkDB
Position
complement(3466225..3466743)
AA seq 172 aa
MSVGEPPFQREITQLYSEHHGWLLTWLRRKLGCRQNAADLAHDTFARILNARESVAGIRE
PRAYLSTTARRLLIDQARRKQIEQAYLQELALTVDALEGFQSPEQIHTTLEALEQIAFIL
EGMHEYSRQAFVLYYLEDMTQQQIARQLKLSERTVRKYLIQALMHCSHSMDT
NT seq 519 nt   +upstreamnt  +downstreamnt
atgtctgtgggtgaaccgcccttccaacgggaaattacccagctctacagcgagcatcat
ggctggctgctcacctggctaagacgcaagctgggctgtcgacagaatgccgccgacctg
gcgcacgatacctttgcacgcatcctgaacgcgcgcgagtccgtcgccggcattcgcgaa
ccccgcgcgtacctgagcaccaccgcccggcgcctgcttatcgaccaagcgcggcgcaag
cagattgaacaggcttacctgcaagaattggcattgacggtggatgcgctcgaaggtttc
caatccccggagcaaatccacaccaccctcgaagccctcgaacagatcgcctttatcctg
gaaggcatgcacgaatactcgcgccaggccttcgtgctgtattacctcgaagacatgacc
cagcaacagatcgcccggcagctcaagttgtcggagcgcaccgtgcgcaagtacctgatc
caggcgcttatgcattgcagccacagcatggacacctga

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