Pseudomonas sp. NS1(2017): CI807_16500
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Entry
CI807_16500 CDS
T11105
Name
(GenBank) RNA polymerase subunit sigma
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
psns Pseudomonas sp. NS1(2017)
Pathway
psns02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
psns00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
CI807_16500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psns03021
]
CI807_16500
Transcription machinery [BR:
psns03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CI807_16500
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
Sigma70_r4
Sigma70_ECF
PhyR_sigma-like
HTH_23
HTH_28
GerE
HTH_Tnp_ISL3
HTH_40
HTH_11
Phage_antitermQ
HTH_29
DUF722
HTH_24
DUF1492
Terminase_5
Phage_NinH
HTH_Mga
HTH_7
Homeodomain
Motif
Other DBs
NCBI-ProteinID:
ASV37714
LinkDB
All DBs
Position
complement(3466225..3466743)
Genome browser
AA seq
172 aa
AA seq
DB search
MSVGEPPFQREITQLYSEHHGWLLTWLRRKLGCRQNAADLAHDTFARILNARESVAGIRE
PRAYLSTTARRLLIDQARRKQIEQAYLQELALTVDALEGFQSPEQIHTTLEALEQIAFIL
EGMHEYSRQAFVLYYLEDMTQQQIARQLKLSERTVRKYLIQALMHCSHSMDT
NT seq
519 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtgggtgaaccgcccttccaacgggaaattacccagctctacagcgagcatcat
ggctggctgctcacctggctaagacgcaagctgggctgtcgacagaatgccgccgacctg
gcgcacgatacctttgcacgcatcctgaacgcgcgcgagtccgtcgccggcattcgcgaa
ccccgcgcgtacctgagcaccaccgcccggcgcctgcttatcgaccaagcgcggcgcaag
cagattgaacaggcttacctgcaagaattggcattgacggtggatgcgctcgaaggtttc
caatccccggagcaaatccacaccaccctcgaagccctcgaacagatcgcctttatcctg
gaaggcatgcacgaatactcgcgccaggccttcgtgctgtattacctcgaagacatgacc
cagcaacagatcgcccggcagctcaagttgtcggagcgcaccgtgcgcaagtacctgatc
caggcgcttatgcattgcagccacagcatggacacctga
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integrated database retrieval system