KEGG   Pseudomonas sp. NS1(2017): CI807_21590
Entry
CI807_21590       CDS       T11105                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
psns  Pseudomonas sp. NS1(2017)
Pathway
psns03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:psns00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    CI807_21590 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:psns03400]
    CI807_21590 (ligD)
Enzymes [BR:psns01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CI807_21590 (ligD)
DNA repair and recombination proteins [BR:psns03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     CI807_21590 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S RNA_ligase
Other DBs
NCBI-ProteinID: ASV38686
UniProt: A0A223VTL9
LinkDB
Position
complement(4594328..4596787)
AA seq 819 aa
MSKPLSEYNRKRDFGITAEPAGSAPGTQRKTSALSFVIQKHDARNLHYDFRLELDGVLLS
WAVPKGPSLDPSQKRLAVHVEDHPLSYGGFEGSIPAGQYGAGDVIVWDRGIWQPHDEPRK
AYTAGKLKFTLVGEKLSGDWALVRTRLKGSGDKEQWLLIKEKDPQARAADDYDIVQAQPN
SVLSNASVGKPKARAKTRKTALPEQFSPQLATLVDRAPEGDWQYEIKFDGYRMLARIQRG
EVRLFTRNGHDWTDRLPRQVKALQALKLKDSWLDGEVVSLNGDGLPDFQALQNAFDIGRS
LDIVYYLFDAPFLNGQDQRQTPVEDRRAALKVELAASRSTLLRFSEAFTAHHRDIFESAC
DLALEGVIGKRLGSPYVSSRNADWIKLKCRLRQEFVIVGYTRPQGSRTGFGALLLAVNDE
TGLVYAGRVGTGFDQASLKTIYAQLTPLERKTSPLEKPLTSTQARGVHWVAPTLVGEVQF
AEWTREGVVRQAAFVGLRTDKPAAQIVHEQPRTAKSMKPAKKTGNDVNITHPDRVIDKQS
GTQKQQLAQFYDSISQWILPFLRHRPVSLLRAPEGIEGEQFFQKHSDRLAIPNIKQLDQA
LDPGHARLMEIDNVGALIGAVQMGSVEFHTWGATSDKIETPDLFVLDLDPDPALPWKTMQ
EAAQLTLSVLDELGLQAFVKTSGGKGLHLIVPLARRDNWDTVKAFAKAIAQFMTEQLPER
FTATSGPKNRVGKIFIDYLRNARGASTVAAYSVRARPGLPVSVPVSREELKGLRGAQQWT
VANLKQRLDALKADPWAGYANRQKISKKMWEKLGAHPPE
NT seq 2460 nt   +upstreamnt  +downstreamnt
atgtccaagccccttagcgaatataaccgcaaacgcgatttcgggataaccgccgaaccg
gcaggcagtgcgcctggcactcaacgcaaaacgtcggcgctgtcgttcgtgatccagaag
catgacgcacgcaacctgcactatgacttccgcctggaactcgacggcgtgctgctcagt
tgggccgtgcccaaaggcccgagcctggatcccagtcagaagcgcctggccgttcacgtc
gaagatcatcccctgagctacgggggctttgaaggcagcattcccgccggccaatacggc
gccggtgacgtcatcgtgtgggaccgtggcatctggcagccccatgacgagccacgcaag
gcctacacagccggcaagctcaaattcaccctggttggcgagaagctctccggcgattgg
gcgctggtgcgcacgcgcttgaaaggcagcggcgacaaggaacaatggttgctgatcaag
gaaaaggacccgcaggcgcgtgcggccgacgactacgatatcgtccaggctcaacccaac
agcgtgctgagtaatgcgtcagtgggaaaacccaaggctcgggccaaaaccaggaaaacc
gccctccccgagcaattctccccgcaattggccacgctggtggatcgcgccccggaaggc
gactggcaatacgaaatcaaattcgacggctaccgcatgctcgcacgcattcaaaggggt
gaagtgcgtttgttcacccgcaacggccatgactggactgatcgcctgccacgccaggtc
aaggccttgcaggctctgaagctcaaggacagctggctggatggcgaggtggtcagcctc
aatggcgacggcctgccggacttccaggcgctgcaaaatgcgtttgatatcggccgcagt
ctggacatcgtttactacctgttcgacgcgccctttctcaatggccaggaccagcgccag
acgccggtcgaggatcgccgcgccgccctcaaagtcgagctggccgctagccgcagcaca
ttgctacgcttttccgaggcatttaccgcgcaccaccgcgacatctttgaaagcgcctgc
gacttggccctcgaaggcgtgatcggcaagcgcctgggcagtccgtacgtctctagtcgc
aatgccgactggatcaaactcaaatgccggttgcgccaggagtttgtgattgtcggttat
acccggccgcaaggctcgcgcacgggattcggcgcgttgttgctggcggtaaatgatgag
actggcctggtgtacgcaggccgcgtaggcacgggttttgatcaagcgtcgctcaagact
atttatgcgcaactcacaccgttggagcgcaagacatcgccgcttgagaaaccgctgacc
agcacccaagcacgtggcgtgcattgggtagcgcccacgttggtcggtgaggtgcagttt
gccgagtggacacgcgagggcgtggtccgccaagcggcgttcgtcgggctgcgcactgac
aagccggcggcgcagattgttcatgaacaaccgcgaacggccaaatccatgaaacccgcc
aaaaagaccggcaatgacgtaaatatcactcatccagaccgcgtgatcgataaacaaagc
ggcacgcaaaaacagcagttggcgcagttctacgacagcatcagccagtggattctgccc
ttcctgcgtcaccgtccggtgtccctgctcagagcacccgagggtatcgagggcgagcaa
tttttccagaaacactcggaccgcctggccattcccaacatcaagcaactggatcaggca
ctcgatcccggccatgcgcgcctgatggaaatcgacaacgtcggcgcattgatcggcgcg
gtgcaaatgggcagcgtagagtttcatacctggggcgccacctcggacaagatcgaaacc
ccggacctgtttgtgctcgacctcgacccggacccggccttgccctggaaaaccatgcag
gaagccgcacaactgaccctgtcagtactggatgagctggggctgcaagcgtttgtcaaa
accagcggtggcaaaggcctgcacctgatcgtgccgttggcgcgccgagacaattgggac
accgtaaaagcgttcgccaaggccatcgcccagttcatgaccgagcagttgccggaacgg
tttaccgcgacatcgggacccaagaaccgggtcggcaagatctttatcgattacctgcgc
aacgcacggggtgccagcaccgtagcggcgtattccgtgcgtgcacggccgggcttgccg
gtgtcggtaccggtcagtcgtgaggagttgaaggggttacgcggcgcgcagcaatggaca
gttgccaatctgaagcaacgcttggacgctttgaaagcggatccctgggcggggtatgcc
aatcgacagaagatcagcaagaagatgtgggaaaaattgggcgcccatccaccggagtga

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