Pseudopelagicola sp. nBUS_20: ACMAZE_00585
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Entry
ACMAZE_00585 CDS
T12042
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
psnu Pseudopelagicola sp. nBUS_20
Pathway
psnu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psnu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACMAZE_00585 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psnu03021
]
ACMAZE_00585 (rho)
03019 Messenger RNA biogenesis [BR:
psnu03019
]
ACMAZE_00585 (rho)
Transcription machinery [BR:
psnu03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
ACMAZE_00585 (rho)
Messenger RNA biogenesis [BR:
psnu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ACMAZE_00585 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
AAA_22
NACHT
OB_RNB
AAA_25
AAA
Motif
Other DBs
NCBI-ProteinID:
XXK38434
LinkDB
All DBs
Position
complement(126028..127299)
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AA seq
423 aa
AA seq
DB search
MTQNKLALADLKATSPKDLLAVAEELDIENASTMRKGEMMFQILRERAEEGWEVSGDGVL
EVLQDGFGFLRSPEANYLPGPDDIYVSPEMIRKYSLRTGDTIDGVMKAPEDAERYFALIT
VALINFETPEKAKHKIAFDNLTPLYPDERLKMEIENPSIKDKSARVIDLVAPIGKGQRSL
IVAPPRTGKTVILQNIAHSIEANHPECYLIVLLIDERPEEVTDMQRSVKGEVISSTFDEP
ATRHVAVSEMVIEKSKRLVEHKRDVVILLDSITRLGRAFNTVVPSSGKVLTGGVDANALQ
RPKRFFGAARNIEEGGSLTIISTALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRVF
PAIDILKSGTRKEELLVDKGDLAKTFVLRRILNPMGTTDGVEFLLSKLKQTKSNSEFFDS
MNT
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atgacacaaaacaaactcgctctcgctgatctaaaagcaacaagcccgaaagatttattg
gcggttgcggaagagttagatattgaaaacgcttctacgatgcgcaagggcgaaatgatg
tttcaaattcttcgggaacgtgccgaggaaggttgggaagtttcaggtgatggcgttctg
gaagttctgcaagatggctttgggttcttacgctctcctgaggcaaattacttacctggt
ccagacgatatttatgtgtcgccagaaatgattcgaaaatattcactacgtactggagat
actattgacggtgtaatgaaggccccagaggacgcagagcgttattttgcattgattact
gtagcgttgattaattttgaaacgccagaaaaagcaaagcacaaaattgcgtttgataat
ttgacgccattgtatccagacgaacgtctcaaaatggaaatagaaaatccatccatcaaa
gataaatcagctcgtgtgattgatcttgtggctccaattggcaaagggcagcgttcgtta
attgttgcgcctcctcgtactggcaaaaccgtaatactccaaaacattgcccacagtatc
gaagccaatcaccctgaatgttaccttatcgtgctacttatcgatgaacgtccagaggaa
gtgacagacatgcagcgatctgtaaaaggagaggtgatttcctctacctttgatgagcct
gcaacacgccatgtggctgtgtcggaaatggttatcgagaaatccaagcgtttagtcgaa
cataaacgagatgtggttatacttcttgattcgataacaagacttggtagagcattcaac
acggtggtgccatcctcgggtaaagttttgactggtggtgttgatgctaatgcactgcaa
cgccctaaaaggttttttggggcagctcgtaatatagaggaaggtgggtcgctcacgata
atatcgacggccttgatcgatacgggaagtcgaatggacgaagttatattcgaagagttc
aagggaacgggtaactcagaaattgttctagatcggaaagtcgcagacaagcgcgtattc
ccagcgatcgatattcttaagtctggaacgaggaaagaagagcttttggttgataagggc
gacttggctaaaacgtttgtattacgtcggattttaaatccaatgggcactacagatggg
gtcgaatttctgttgtcaaaattgaagcaaactaaatcgaactcagaattttttgattct
atgaatacttag
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