Pseudomonas sp. NyZ201: ACPFMA_00970
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Entry
ACPFMA_00970 CDS
T11215
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
psny Pseudomonas sp. NyZ201
Pathway
psny03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psny00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACPFMA_00970 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psny03021
]
ACPFMA_00970 (rho)
03019 Messenger RNA biogenesis [BR:
psny03019
]
ACPFMA_00970 (rho)
Transcription machinery [BR:
psny03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
ACPFMA_00970 (rho)
Messenger RNA biogenesis [BR:
psny03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ACPFMA_00970 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
AAA_22
S1CSD-TOTE-2
NACHT
Motif
Other DBs
NCBI-ProteinID:
XRQ39093
LinkDB
All DBs
Position
222887..224146
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AA seq
419 aa
AA seq
DB search
MNLTELKQKPITDLLEMAEQMGIENMARSRKQDVIFSLLKKHAKSGEEISGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTIN
FDRPENAKNKILFENLTPLFPNERLKMEAGNGSTEDLTGRVIDLCAPIGKGQRGLIVAPP
KAGKTIMLQNIAANITRNNPECHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPTRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMELPLDRRIAEKRVFPAINI
NRSGTRREELLTADDELQRMWILRKLLHPMDEIAAIEFLVDKLKQTKTNDEFFLSMKRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaacctgactgaactcaagcaaaagccgattaccgatctgctcgaaatggccgaacag
atgggcatagaaaatatggcccgttcgcgcaagcaggatgtgattttctccctgctgaaa
aagcacgcgaaaagcggcgaggaaatctccggtgacggcgtgctggagattctccaggac
ggtttcggcttcctgcgttcggcggactcctcctacctggccggccctgacgacatctat
gtctcgcccagccagatccgtcgtttcaacctgcgcaccggcgacaccatcgtcggcaag
atccggccgccgaaagagggcgagcgttacttcgcgctgctgaaggtcgacaccatcaac
ttcgaccgtccggaaaacgcgaagaacaagatcctgttcgaaaacctgacgccgctgttc
cccaacgagcgcctgaagatggaagccggcaacggttccaccgaagacctcaccggccgc
gtgatcgacctctgcgccccgatcggcaagggccagcgcggcctgatcgtcgccccgccg
aaagcgggcaagaccatcatgctgcagaacatcgcggcgaacatcacccgcaacaatccc
gagtgccacctgatcgtcctgctgatcgacgagcgcccggaagaagtgaccgagatgcag
cgcaccgtgcgcggcgaagtggtcgcctcgaccttcgacgagccgccgacccgtcacgtg
caagtggccgaaatggtcatcgagaaggccaagcgcctggtcgagcacaagaaggacgtg
gtcatcctgctcgactccatcacccgcctggcccgcgcctacaacaccgtgatcccgagc
tccggcaaggtcctgaccggtggtgtcgacgcccacgccctggagaagccgaagcgcttc
ttcggtgccgcgcgtaatatcgaggaaggcggctcgctgaccatcatcgccaccgcgctg
gtcgaaaccggctcgaagatggacgaagtgatctacgaggagttcaagggtaccggcaac
atggaactgcccctggaccgtcgcatcgccgagaagcgtgtgttcccggccatcaacatc
aaccgttcgggtacccgccgcgaagagctgctgaccgccgacgacgaactgcagcgcatg
tggatcctgcgcaagttgctgcacccgatggacgagatcgccgccatcgagttcctggtc
gacaagctcaagcagaccaagaccaacgacgagttcttcctgtcgatgaagcgcaagtaa
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