Pseudomonas sp. NyZ201: ACPFMA_02880
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Entry
ACPFMA_02880 CDS
T11215
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
psny Pseudomonas sp. NyZ201
Pathway
psny03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psny00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ACPFMA_02880 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psny03021
]
ACPFMA_02880 (rpoC)
03400 DNA repair and recombination proteins [BR:
psny03400
]
ACPFMA_02880 (rpoC)
Enzymes [BR:
psny01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ACPFMA_02880 (rpoC)
Transcription machinery [BR:
psny03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ACPFMA_02880 (rpoC)
DNA repair and recombination proteins [BR:
psny03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ACPFMA_02880 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
XRQ39441
LinkDB
All DBs
Position
655076..659275
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EAALHAKIKVRINETVNDRDGNSVKNTRIVDTTVGRALLFQVVPAGLSFDVVNQPMKKKA
ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIGTATEE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDREGNEVEQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTEQGLLMTPHIEGGDVVEPLGERVL
GRVIARDVFKPGTDDVIVPAGTLVDEKWVEFIELNSIDEVVVRSPISCETRYGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGMVRL
HNLKQVERADGNLVAVSRSGELAIADEFGRERERYKLPYGAVISVKEGEKVEAGAIVAKW
DPHTHPIVTEMKGTVTFVGMEEGITIKRQTDELTGLTNIEVLDVKDRPAAGKEIRPAIKM
VDANGKDLLLPGTDVPAQYFLPANALVGVADGAQIGVGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPNDGSDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEITESGDSSFIKGDQMELTQVLVENERLAAEDKFVSKFSRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRRDADKPLR
VSASEVEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacctactgaatttgctgaaaaaccagggtcaagtcgaagagttcgacgccatc
cgtatcggactggcctcgcctgagatgatccgttcgtggtcgttcggtgaagtaaaaaaa
ccggaaaccatcaactaccgtacgttcaagcctgagcgtgacggcctgttctgcgccaag
atctttggcccagtcaaggactacgagtgcctgtgcggcaagtacaagcgcctgaagcac
cgtggcgtgatctgcgagaagtgcggcgttgaagttgccctggccaaggttcgtcgtgag
cgcatggcgcacatcgagctggcttcgccggtcgcccacatctggttcctgaagtccctg
ccgtcccgtatcggtctgctgatggacatgaccctgcgtgatatcgagcgcgttctctac
ttcgagagctatgtcgttatcgacccgggcatgaccaccctggaaaaaggccagctgctg
aacgacgagcagtatttcgaagcgctggaagagttcggtgacgacttcgacgcccgcatg
ggtgccgaggctgtccgcgagctgctgcacgctatcgacctggaacacgagattggccgc
ctgcgcgaggaaatcccgcagaccaactcggaaaccaagatcaagaagctgtccaagcgt
ctgaaactgatggaggccttccagggctcgggcaacctgcctgagtggatggtcctgacc
gttctgccggttctgccgccagatctgcgtcctctggttccgctggatggcggtcgcttc
gcgacttccgacctgaacgacctgtatcgtcgggtgatcaaccgtaacaaccgtctgaag
cgcctgctcgatctgtccgctccggacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaagcggtcgatgccctgctcgacaacggtcgtcgtggtcgtgcaatcaccggttcgaac
aagcgtcctctgaaatccctggctgacatgatcaagggtaaacagggtcgtttccgtcag
aaccttctcggaaagcgtgtcgactactccggccgttcggtaattaccgtgggtccgacc
ctgcgtctgcaccagtgcggtctgccgaagaagatggctctcgagctgttcaagccgttc
attttcggcaagctggaaatgcgtggtctggcgaccaccatcaaggctgccaagaagatg
gtcgagcgcgagctgcctgaggtctgggacgttctcgccgaggtgatccgcgaacacccc
gtactgctcaaccgcgcgccgactcttcaccgtctgggtatccaggcctttgaaccggtt
ctgatcgaaggcaaggcaatccagctgcacccgctggtctgcgccgcgtacaacgccgac
ttcgacggtgaccagatggccgtgcacgtgccgctgacgctggaagcccagctggaagcg
cgcgcgctgatgatgtcgaccaacaacatcctgtcgccagccaacggtgagccgatcatc
gttccgtcgcaggacgtggtactgggtctgtactacatgacccgtgaagccatcaacgcc
aagggcgaaggtcgcgtgttcgccgacctgcaggaagtcgaccgcgtattccgcgccggc
gaggctgccctgcacgcgaagatcaaggtccgtatcaacgagaccgtgaacgaccgtgat
ggcaacagcgtcaagaacacccgcatcgtcgacaccaccgtcggccgtgccttgctgttc
caggtagtgccggccggcctgtcgttcgacgtggtcaaccagcctatgaagaagaaggcg
atctccaagctgatcaaccagtgctatcgcgtggttggcctgaaggagaccgtgatcttc
gctgaccagctgatgtacaccggttttgcctactcgaccatttccggcgtttcgattggc
gttaacgacttcgttatcccggacgagaaagcccgcatcatcggtaccgctaccgaagaa
gtgaaggaaatcgagagccagtacgcctccggcctggtaacccagggcgagaagtacaac
aaggtcatcgacttgtggtcgaaggccaacgacgaagtgtccaaggcgatgatggccaac
ctctcgaaagagaaggtcatcgaccgcgaaggcaacgaagtcgagcaggagtccttcaac
tccatgtacatgatggctgactccggtgcccggggttcggctgcccagattcgtcagctg
gccggtatgcgtggtctgatggcgaagccggacggctccatcatcgaaacgccgattacc
gcgaacttccgtgaaggcctgagcgtactccagtacttcatttcgactcacggtgctcgt
aaaggtctggcggataccgcgctgaaaaccgcgaactccggttacctgactcgccgtctg
gtagacgttgcccaggatctggtcgttaccgaaatcgactgtggcaccgagcagggtctg
ctgatgaccccgcacatcgaaggcggcgacgttgtggagcctctgggtgagcgtgttctg
ggtcgtgtcattgctcgtgacgtgttcaagcctggcaccgacgatgtcatcgttccggcc
ggtaccctggtcgacgagaagtgggtcgagttcatcgagctgaacagcatcgacgaagtg
gtcgtgcgttcgccgatcagctgtgagacccgctacggcatttgcgccaagtgctacggt
cgtgacctggcccgcggtcatcaggtgaacattggtgaggcggttggcgttatcgctgcc
cagtccatcggtgagcctggtacccagctgaccatgcgtacgttccacatcggtggtgct
gcaagccggacctcggctgccgacagcgtccaggtgaagaacggcggtatggtccgtctg
cataacctgaagcaggtagagcgtgccgacggcaacctggtcgcggtatcgcgttccggc
gagctggccattgccgatgaattcggtcgtgagcgtgagcgctacaagctgccttacggt
gcggtcatttccgtgaaggaaggtgagaaggtcgaagctggcgccatcgtcgccaagtgg
gacccgcacacccacccgatcgttaccgaaatgaaaggtaccgtgaccttcgtgggcatg
gaagaaggcatcacgatcaagcgccagaccgacgaactgaccggtctgaccaacatcgag
gtcctggacgtcaaagaccgtccggctgcaggcaaggaaatccgtcctgcaatcaagatg
gtcgacgccaatggcaaggatctgctgctgccaggtaccgatgtacctgcccagtacttc
ctgccggcgaacgccctggtcggtgtggctgacggtgcccagatcggtgtcggtgacgtt
attgcgcgtatcccgcaagaaacctcgaagacccgtgacatcaccggtggtctgccgcgc
gttgctgacctgttcgaagcgcgtcgtccgaaagaagcgtcgatcctggctgaagtcagc
ggtaccatcgccttcggtaaagagaccaagggcaagcgccgcctggtcatcacgccgaac
gacggtagcgatccgtacgaagagctgattccgaagtggcgtcacctgaacgtcttcgaa
ggcgaacaagtgaaccgcggcgaagttatctccgacggtccgagcgatccgcacgacatc
ctgcgtctgctgggtgtgagcgcgctggccaagtacatcgtcaacgagatccaggacgtt
taccgtctgcaaggcgttaagatcaacgacaagcacatcgagaccatcctgcgtcagatg
ctgcgcaaggtcgagatcaccgagtccggcgattccagcttcatcaagggcgaccagatg
gagctgacccaggtgctggtcgaaaacgagcgcctggctgccgaagacaagttcgtgtcg
aagttctcgcgcgtgctgctcggtatcaccaaggcctcgctgtccaccgagtcgttcatc
tcggcggcctccttccaggagaccacccgcgttctgaccgaagcggcggtgaccggcaag
cgcgattacctgcgcggcctgaaggaaaacgtggttgtgggtcgtctgatcccggccggt
accggtctggcataccacagcgagcgcaagcgtcgccgtgatgccgacaagccgctgcgt
gtgagcgccagtgaggtggaagccgcactgaccgaagcgctgaactccagcggtaactga
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integrated database retrieval system
