Pseudomonas sp. NyZ201: ACPFMA_06905
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Entry
ACPFMA_06905 CDS
T11215
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
psny Pseudomonas sp. NyZ201
Brite
KEGG Orthology (KO) [BR:
psny00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
psny03009
]
ACPFMA_06905 (rlmD)
Enzymes [BR:
psny01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
ACPFMA_06905 (rlmD)
Ribosome biogenesis [BR:
psny03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
ACPFMA_06905 (rlmD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRAM
Methyltr_RsmB-F
MTS
Cons_hypoth95
TRM5-TYW2_MTfase
Methyltransf_11
Methyltransf_4
Methyltransf_23
Methyltransf_15
PCMT
RrnaAD
Methyltransf_12
Methyltransf_37
PrmA
DNA_methylase
Ubie_methyltran
Motif
Other DBs
NCBI-ProteinID:
XRQ40181
LinkDB
All DBs
Position
1497847..1499214
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AA seq
455 aa
AA seq
DB search
MSKGKRNGGLRFQPAGGSRAPQVPTGKKQRLTIERLAGDGRGIAFLDGRTWFVSGALAGE
EVEARVLNAHGKVVEARLERVFGASAQRRAAPCRHFERCGGCNLQHLSHDDQLQLKQRLL
AEQLQRVAGVVPEQWAAPLSGPEFGYRRRARIAVRWDHKTKKLDVGFRAEASQDIIAIDD
CPVLVQPLQSVLRHLPLLLQSLGKPQVVGHVELFSGTALAMLVRHTAPLGEVDLGKLKAF
CAEAGVQLWLQGEGEPWSVEPEQSLGFELQPWNLTLAYRPGDFVQVNAGVNTAMIEQALD
WLAPQNDERVLDLFCGLGNFALPLAQKAAEVVAVEGVQAMVERAAANARSNNLNNVRCFQ
ADLSQPLAASGWATEGFSAVLLDPPRDGAYEVVRNIAALGGKRLVYVSCNPATLARDTLE
LIKQGYRLKRAGILDMFPQTAHVEAMALFEAGQPG
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaaggtaaacgtaacggcggcctgcgcttccagccggccggcggcagccgtgcg
ccccaggtgccgacgggcaagaagcagcgcctgaccatcgagcgcctggctggcgatggc
cgcggcatcgccttcctcgacggccgcacctggttcgtcagcggtgcgctggcgggcgaa
gaggtcgaggcgcgggtgctcaatgcccatggcaaggtggtcgaggcccgcctggagcgg
gtcttcggcgccagtgcccagcgccgcgcggcaccctgccggcacttcgagcgttgtggc
ggctgcaacctgcagcacctgtcccatgacgatcagcttcagctcaagcagcgcctgctt
gccgaacagttgcagcgggtggcgggtgtcgtgcccgagcaatgggccgcgcctttgagc
gggccggaattcggctatcgccgccgggcccggattgcggtgcgctgggatcacaagacg
aagaaactcgacgtcggtttccgcgccgaagccagccaggacatcatcgccatcgacgac
tgtccggtgctggtacagcccttgcagtcggtgctgcgccatctgccgctgctgttgcag
agcctgggcaagccccaggtggtagggcacgtcgagttgttcagcggtaccgccctggcc
atgctggtgcgccacaccgcaccgctgggcgaggtggacctcggcaagctgaaagccttc
tgcgccgaagcaggcgtgcagctctggctgcaaggcgaaggcgagccctggtcagtggaa
ccggagcagtccctcgggttcgaactgcagccctggaacctgaccctggcctatcgcccg
ggcgatttcgtccaggtcaacgccggcgtcaatacggcgatgatcgaacaggccctcgac
tggctcgccccgcagaatgacgagcgcgtgctggacctgttctgcggcctgggcaacttc
gccctgccgcttgcgcagaaggccgccgaggtggtggccgtggaaggggtgcaggcaatg
gtcgaacgggccgctgccaatgcccgtagcaataatttgaataatgttcgctgttttcag
gcggatttatcccaaccgctggcagcgtccgggtgggcgacggaaggcttttctgcggta
ctcttggacccaccccgagacggtgcctacgaagtcgtcagaaatatcgcagcactgggt
ggaaagcgcttggtctatgtgtcgtgcaatccggcgaccctggcccgcgatacgcttgag
ttgatcaagcagggttaccggttaaaaagggccgggatcctcgacatgttcccgcagaca
gcacatgtcgaggccatggcgttattcgaggcgggtcagccaggctga
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