Pseudomonas sp. NyZ201: ACPFMA_17275
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Entry
ACPFMA_17275 CDS
T11215
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
psny Pseudomonas sp. NyZ201
Pathway
psny02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
psny00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
ACPFMA_17275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psny03021
]
ACPFMA_17275
Transcription machinery [BR:
psny03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ACPFMA_17275
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
Sigma70_r4
Sigma70_ECF
HTH_40
HTH_23
HTH_24
GerE
HTH_36
HTH_29
DUF1804
HTH_11
Motif
Other DBs
NCBI-ProteinID:
XRQ36780
LinkDB
All DBs
Position
3896321..3896836
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AA seq
171 aa
AA seq
DB search
MSVDDFALRSAVHDLYSSHSGWLRGWLRKRLDNHSDAADLVQDTFVRVLKARQATDIRQP
RQYLSTVAKGLMIDLFRRRALEHSYLEALAALPEETWPSQETQAIVLETLMEIDRMLDSL
GDKVRQTFILSQFEGLSYPKIAERQGISLRTVNNHMAKAIEHCCLIRMGLL
NT seq
516 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtcgacgatttcgccctgcgctccgccgtccatgatctgtacagcagtcacagc
ggctggctgcgtggctggttgcgcaagcgcctggataaccatagcgatgccgccgacctg
gtccaggacaccttcgtgcgggtgctcaaggcgcggcaggccacggacattcgtcagccc
cgccagtacctgagtaccgtggccaagggcctgatgatcgatctgttccgccgccgcgcc
ctggagcacagctacctggaagccctcgccgccctgcccgaggaaacctggccttcccag
gaaacccaggccatcgtcctcgagaccctcatggaaatcgaccgcatgctcgacagcctt
ggcgacaaagtgcgccagaccttcatcctgtcgcagttcgaaggcttgagttatccgaag
atcgccgagcgccagggcatctccctgcgcacggtgaacaaccatatggccaaggccatc
gagcactgctgcctgatccgcatgggcttgctgtga
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