Pseudomonas sp. NyZ201: ACPFMA_18310
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Entry
ACPFMA_18310 CDS
T11215
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
psny Pseudomonas sp. NyZ201
Pathway
psny03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
psny00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
ACPFMA_18310 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psny03400
]
ACPFMA_18310 (ligD)
Enzymes [BR:
psny01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
ACPFMA_18310 (ligD)
DNA repair and recombination proteins [BR:
psny03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
ACPFMA_18310 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
SL4P
Motif
Other DBs
NCBI-ProteinID:
XRQ36973
LinkDB
All DBs
Position
4132959..4135430
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AA seq
823 aa
AA seq
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MAKPLEEYQRKRNFAATPEPSGKRARGKARALQFCIQKHDASHLHYDFRLELDGTLKSWA
VPKGPSLDPKVKRLAVHVEDHPLDYASFEGHIPEGHYGAGDVIVWDRGIWIPEGDPHQGY
AKGHLRFELQGEKLGGRWNLFRTRLGGKKEQWMLVKSSDAQAREEKDYDILEAAPDSVLS
DRSLPSARPVAAPAAKAPAARKKAASASSTKKAPKAALPESLKPQLATLVDSPPQGDWSY
EIKFDGYRILARIDDGEVRLFTRNGHDWTAKMPRQVAALKTLKLKSAWLDGEMVVADDNG
VADFQALQNAFDTEHDERILYYLFDVPWLEGRDLRQLPLQERRAALEAILADPPPELRYS
ASFAEPVASLLASACQMNLEGLIGKRQDSVYVERRSSDWIKLKCQKRQEFVVVGYTEPKG
SRAAFGALLLALHDDGRLRYAGKVGTGFSTETLQSLHRRLQPLEAPRPPLDNPPTGAEAR
GVHWLKPQLLAEVSFAQMTRDGIVRHAVFHGLRNDKPASAINLERAMPVKNSSAKAMRLT
HPDRIIDASSNTTKLDIAEYYAKVAGLILPHLENRPVALVRAPDGLDGELFFQKNAAQLD
LPHVKTYDKDQAGQAAMIINREDTLLGAVQMNTLELHTWNATDKQFERPDRFVLDLDPDP
KLPWKAMIEATTLTLTLLEELGLRCFLKTSGGKGIHVVVPLQRKAGWDEVKDFSHAIVSH
MAGLFPERLSAVSGPKNRVGRIFIDYLRNGKGATTVCAWSLRAREGMPVSVPIWPEELAG
LKGANQWTLANIDERLADGNDPWQDYASTRQSITAGMRKKLGL
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcccctcgaggagtaccaacgcaagcgcaacttcgccgccacccccgaaccc
agcggcaagcgagctcgtggcaaggcccgggcgctgcagttctgcatccagaaacacgac
gccagccacctgcactacgatttccgcctggagctcgatggcaccctgaaaagctgggcg
gtgcccaagggcccgtcgctggatcccaaggtcaagcgcctggcggtgcacgtcgaggac
cacccgctggactacgccagcttcgaaggtcatatccccgagggccactacggcgccggc
gacgtgatcgtgtgggaccgcggcatctggattcccgaaggcgacccgcaccagggctac
gccaagggccacctgcgcttcgaactgcaaggggaaaagctcggcgggcgctggaacctg
ttccgcacccgcctcggcggcaagaaggaacagtggatgctggtcaagtcctcggatgcc
caggcccgcgaagagaaggactacgacatcctcgaagccgccccggacagcgtgctcagc
gaccgcagcctgccttcggccaggccggtcgcggcgcctgcggcaaaggcacccgcggca
aggaagaaagccgcatccgccagcagcacgaaaaaggcccccaaggccgccctgcccgaa
agcctcaagccgcagttggccaccctggtggactcgccgccgcaaggcgactggagctac
gagatcaagttcgacggctaccgcatccttgcccgtatcgacgatggcgaggtgcgcctg
ttcacccgcaatggccatgactggacagcgaagatgccgcgccaggtggcggcgctgaaa
acgctcaagctgaaatccgcctggctcgacggtgagatggtggtcgccgacgacaacggc
gtggccgacttccaggccctgcagaacgccttcgataccgagcacgacgaacgcattctc
tactacctgttcgatgtgccctggctcgaaggtcgcgatctgcgccagttgccgctgcag
gagcggcgcgccgcccttgaagcgatcctcgccgacccgccgccggagctgcgttactcg
gcgagcttcgccgagccggtcgcctcgctgctcgccagcgcctgccagatgaacctggaa
ggcctgatcggcaagcgccaggacagcgtctacgtggagcgccgcagcagcgactggatc
aagctcaagtgccagaaacgccaggagttcgtggtggtcggctacaccgagcccaagggc
agccgggcagcgttcggcgccctgttgctggccctgcatgacgatggccggttgcgttat
gcgggcaaggtcggcaccggtttcagcaccgagaccctgcaaagcctgcatcgccggctg
caaccgctggaggcgccgcgcccgccactggataacccgccgaccggcgccgaagcccgg
ggcgttcactggctcaagccgcagttgctggcagaagtcagcttcgcccagatgacccgc
gacggcatcgttcgccacgcggtcttccatggcctgcgcaacgacaagccggccagcgcc
atcaacctggagcgtgccatgcccgtaaagaacagcagcgcaaaggcaatgcgcctgacc
catcccgaccgcatcatcgatgccagcagcaacaccaccaagctggatatcgccgagtac
tacgccaaggttgccgggctgatcctgccgcacctggagaaccgtcccgtggcgctggtc
cgcgccccggacgggctggacggcgaactgttcttccagaagaacgccgcccagctcgac
ctgccccacgtgaaaacctacgacaaggaccaggccggccaggccgcgatgatcatcaac
cgcgaagacaccctgctcggtgcggtgcagatgaacacgctcgaattgcacacctggaat
gccaccgacaagcaattcgagcgccccgaccgcttcgtgctcgacctcgacccggacccg
aaactgccctggaaggcgatgatcgaagccaccaccctgaccctcacccttctggaagag
ctgggcctgcgctgtttcctcaagaccagcggcggcaagggcatccacgtggtagtgccg
ttgcagcgcaaggccggctgggacgaggtcaaggacttcagccacgccatcgtcagccac
atggccgggctgtttcccgaacggctgtcggcggtctccgggccgaagaaccgggtcggg
cggatcttcatcgactacctgcgcaacggcaagggggcgaccaccgtctgcgcctggtcg
ctgcgggcccgggaaggcatgccggtgtcggtgccgatctggcccgaggaactggccggg
ctcaagggggccaaccaatggaccctggccaatatcgacgagcgcctggccgacggcaac
gacccatggcaggactacgccagcacccgccagtcgatcaccgccggcatgcgcaagaaa
ctcggcctgtga
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