Pseudomonas sp. NyZ201: ACPFMA_21945
Help
Entry
ACPFMA_21945 CDS
T11215
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
psny Pseudomonas sp. NyZ201
Pathway
psny02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
psny00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
ACPFMA_21945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psny03021
]
ACPFMA_21945
Transcription machinery [BR:
psny03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ACPFMA_21945
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
Sigma70_ECF
HTH_20
HTH_23
SH3_16
HTH_28
HTH_Tnp_4
HTH_11
HTH_DeoR
HTH_40
HTH_7
SpoIIID
Motif
Other DBs
NCBI-ProteinID:
XRQ37653
LinkDB
All DBs
Position
complement(4907124..4907639)
Genome browser
AA seq
171 aa
AA seq
DB search
MSTSDTQTAANEHLHILYREHNGWLRGWLRARLNNSADAADLAQDTFIRVMVARTADSLQ
QPRHYLATIARGLVIDLHRRRSLEQAYLDVLASRPEVHAPSAETRAIILDSLLAIDRMLD
GLGQRTRQIFLAVQLDGLTYEKTAQRFDVSVSTVRKHLAKGLMHCLLMDEE
NT seq
516 nt
NT seq
+upstream
nt +downstream
nt
atgtccacatcggacacgcaaaccgctgccaacgaacacctccacatcctatatcgcgag
cacaatggttggctgcgcggctggttgcgcgcgcgcttgaacaactcagccgatgcggct
gaccttgctcaggatacgtttattcgggtcatggttgcccgcacggctgattccctgcaa
cagccgcgtcactacctggcaaccattgcgcgtggtctggtcatcgatctccatcgccgg
cgtagcctggaacaggcctacctcgatgtactggcttccaggccagaagttcatgcgccg
tctgcagaaacccgcgcgatcattctggacagccttctggccattgatcgcatgctcgat
gggctcggtcagcgcacccggcaaattttccttgccgtgcaactggatgggctgacttac
gaaaaaaccgcgcagcgttttgacgtgtcggtcagcacggtgcgcaagcacctggcgaaa
ggcttgatgcattgcctgttgatggatgaagaatga
DBGET
integrated database retrieval system
