Pseudomonas sp. NyZ201: ACPFMA_25345
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Entry
ACPFMA_25345 CDS
T11215
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
psny Pseudomonas sp. NyZ201
Pathway
psny03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psny00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
ACPFMA_25345 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psny03400
]
ACPFMA_25345 (recD)
Enzymes [BR:
psny01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
ACPFMA_25345 (recD)
DNA repair and recombination proteins [BR:
psny03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
ACPFMA_25345 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
AAA_11
NAT10_TcmA_helicase
Viral_helicase1
AAA_22
SH3_13
UvrD-helicase
AAA_17
SLFN-g3_helicase
AAA_16
AAA_28
TraI_hel_assoc_N
PhoH
T2SSE
nSTAND3
AAA
NTPase_1
AAA_5
Motif
Other DBs
NCBI-ProteinID:
XRQ38296
LinkDB
All DBs
Position
complement(5622835..5624916)
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AA seq
693 aa
AA seq
DB search
MIRTFDDLLPTPLDAEHLAALAPLTDSNDLLALLDRWVERGWLRSLDRAFVGFLRDRAPH
GGPLVLLAAALASHQLGHGHVCLDLHKTLAEPDFALSLPPEGDALAGPLLLPSQLLERLS
AETWLQHLHASALVAAGNDAQQLSRPLVLSEGRLYLRRYWAYERQIDGALRQRLAQHDAT
PRDLRARLDSLFKDGAEPGQVDWQKLACALATRSAFSIITGGPGTGKTTTVVRLLALLQA
PAVEAGRPLRIRLAAPTGKAAARLTESIGQQVELLEVSAEVREHIPCDVSTVHRLLGSRP
NSRHFRHHAGNQLPLDVLVVDEASMIDLEMMANLLAAMPDSARLILLGDKDQLASVEAGA
VLGDLCRDAEEGRYSPQTAAWLEQVSGESLANSGLLPGDAQQHPLAQQVVMLRRSRRFGE
GSGIGELARLVNRQQAGKARELLQQGKHADVFGLTLRGEQDRALDRLVLDGLEQGAEGPL
GYRDYLHAIRQGRPPADRAGDEPCWGEWALGVLKAFERFQLLCAVRKGPWGVEGLNQRVC
RVLTHAGLIEGDLPWYEGRPVLVTRNDYGLNLMNGDIGIALRVPDGHSEEAPLRVAFPRN
DGRGGVRFVLPSRLSEVETVYAMTVHKSQGSEFAHTALVLPDALNPVLTKELIYTGITRA
KHWFSLVEPRKGVLEEAVERKVKRISGLMLERT
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atgatccgtaccttcgacgacctgttgcctaccccgctggacgctgaacacctcgccgcc
cttgcgccgctgaccgacagcaacgacctgctggccttgctcgatcgctgggtcgagcgc
ggctggctgcgctcgctggaccgcgccttcgtcggcttcctgcgtgaccgcgccccccac
ggcggccccctggtgctgctggctgcggcgctggccagccaccagctgggccatggccac
gtctgcctcgacctgcacaagacccttgccgaaccggacttcgccttgtcgctgcctccc
gagggtgatgccctggcggggcccctgctattgccatcgcaattgctcgagcgcctgagc
gccgagacctggctgcagcatttgcacgccagcgcactggtggccgcaggtaatgatgca
cagcagctttcccggccgctggtcctcagcgagggtcgcctgtacctgcgccgctactgg
gcctacgaacggcagatcgacggggccctgcgccagcgactggcgcagcatgacgccact
ccacgggatctgcgtgcgcggctggacagcctgttcaaggatggcgccgaacccgggcag
gtcgattggcagaagctcgcctgtgccctggccacccgaagcgcgttcagcatcatcacc
ggcggtcccggtaccggcaagaccaccacggtggtgcggttgctggccttgttgcaggcg
ccggcagtcgaagcagggcgtcccttgcgcattcgcctggcggcgccgaccggcaaggcg
gctgcgcgcctgaccgaatccataggccagcaggtcgagttgctcgaggtcagtgccgag
gtacgtgagcatattccctgcgatgtctccaccgttcaccgtctgctcggcagtcgtccc
aactcccggcacttccgccaccatgcgggcaatcaattgccgctggatgtgctggtggtg
gacgaagcttcgatgatcgatctggagatgatggccaacctgctggccgccatgccggac
agtgcccggctcattctcctgggtgacaaggaccagttggcctcggtggaggccggggcg
gtactcggcgatctttgccgggatgccgaggaaggtcgctacagtccgcaaacggctgcc
tggctggagcaggtcagtggcgagtccctggcgaacagtggcctgcttcccggcgatgcg
caacagcaccccttggcccagcaggtggtcatgttgcggcgatcgcggcggttcggcgag
ggaagcgggattggcgagctggctcgcctggtcaatcgccagcaggcgggcaaggcgcgc
gaactgctccagcagggcaagcatgccgatgtcttcggtctgaccctgcgcggtgaacag
gaccgcgcccttgaccgactggtgctggatggcctggagcaaggggcagagggcccgttg
ggctatcgcgattacctgcatgcgatccgccaggggcgcccgcctgccgaccgggccggg
gacgaaccttgctggggtgaatgggcgcttggcgtgctcaaggcgttcgagcgcttccag
ttgctctgtgcggtgcgcaagggcccctggggcgtggaagggctgaatcagcgggtttgc
cgtgtgctgacccatgccggcctgatcgaaggcgacctgccctggtacgaaggccgtccg
gtactggtgacccgcaacgactacggcctgaacctgatgaacggcgacatcggcatcgcc
ctgcgcgtgccggatggccactccgaggaagcaccgctgcgggtcgccttcccgcgcaac
gacggtcgtggcggcgtacgtttcgtcctgcccagccggctcagcgaagtggaaaccgtg
tacgccatgaccgtgcataaatcccaaggctcggaattcgcccacaccgcactggtgctg
ccggatgccttgaacccggtgctgaccaaggaactcatctataccggcatcacccgtgcc
aagcactggttcagcctggtcgagccacgcaaaggcgtgctggaagaggcggtggaacgc
aaggtgaagcggatttcggggttgatgctggagaggacctag
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