Pseudomonas sp. NyZ201: ACPFMA_25350
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Entry
ACPFMA_25350 CDS
T11215
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
psny Pseudomonas sp. NyZ201
Pathway
psny03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psny00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
ACPFMA_25350 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psny03400
]
ACPFMA_25350 (recB)
Enzymes [BR:
psny01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
ACPFMA_25350 (recB)
DNA repair and recombination proteins [BR:
psny03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
ACPFMA_25350 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_25
AAA_30
AAA_11
AAA_12
Motif
Other DBs
NCBI-ProteinID:
XRQ38297
LinkDB
All DBs
Position
complement(5624913..5628602)
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AA seq
1229 aa
AA seq
DB search
MSAAVEQPPLALTFPLHGSQLIEASAGTGKTFTISALYLRLVLGHGGEQGFGRELLPPQI
LVVTFTDAATKELRERIRTRLAEAARFFRGDLAEADLLLTQLRDDYPADAWPACANRLEV
AAQWMDEAAVSTIHSWCQRMLREHAFDSGSLFTQTLETDHSELLGQVMRDYWRRFCYGLE
GDALHWVRENWGSPDQLLPRVRALFGRHSAEVQALEPQEVIREVLRQRGELLCSLKAPWA
QWSQELLEILRAGIKAKTVNGSMIQERYFKPWCDKLLAWAQDDLAHDLDIGTGFTRLTPD
GLAEAWKSEPPSHPALEVMVTLREQLKALPTPDAQLLEHAAAWVSQRFEQEKRRRAEMGF
DDMLQRLDQALAGPAGERLAGLIREQFPVALIDEFQDTDPVQYRIFECIYRIEDNARDTG
LFLIGDPKQAIYAFRGADIFTYLGARRATAGRLHSLDTNFRSTQPMVTAVNHVFMTAEQR
QEGRAAFLFRDSRGDNPVPFVAVKARGHKEHLQVDGQPLPALTLWHQDSDTPLSSTLYRQ
MMAAGCATRIVQLLNGGQQGRAGFIQADGSLRGCLPSDIAILVRDGHEAQLVRAELAARG
VRSVYLSDKDSVFAAQEARDLLSWLKACAEPDNERLLKAALASHTLAQSLCALARLNEDE
MLWEDRVMQFRQYRMIWRIQGVLPMLRHLLHDFRLPGLLMSRTDGERVLTNLLHLSELLQ
QAATELDGEQALIRHLAEHLAASGQAGEEQILRLESDEQLVKVVTIHKSKGLEYELVFLP
FICTAKPVDGKRLPLGWHDEQGVAHLTLSPSDEQIAMADDERLAEDLRLFYVALTRARHA
CWLGVADLKRGTGKESLLHRSAFGYLLGGGEPLADSTALAGWLDDLGKGCDAISRLPPPE
ADDQVYVPARQTAELLAPREPKRRAAENWWIASYSALRIGEEALALDADVAQAQQLLDDE
RPDPHAAREVMATAGDIHRFPRGPNPGTFLHGLLEWAGQQGFERVAAAPGELRQMIAQRC
NRRDWKGWINTLGDWLEHLLSTPMPVGNDRSPVVLGALGQYQIEMEFWFASHRVDVLQLD
RLVARHTHQGAPRPAAQAALLNGMFKGFIDLVFEHDGRYYVADYKSNWLGPDDLAYSEAA
MEAAILEHRYDLQYVLYLLALHRQLRARLPDYDYDRHIGGALYLFLRGAHSPGQGAYFVK
PPRALIEALDALFRGAPQGVQQDLFGDVP
NT seq
3690 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcagcagtcgaacagccgccactggccctcaccttcccgctccacggcagccaa
ctgatcgaggccagcgccggtaccggcaagacgtttaccatttccgcactctacctgcgc
ctggtgctcggccatggtggcgagcagggttttggccgcgagctgctgcctccccagatc
ctcgtggtgaccttcaccgatgccgctaccaaggagttgcgcgaacgtatccgcacccgt
ctggccgaggccgcgcggttcttccgtggcgatcttgccgaggccgatctgctactgacg
caactgcgcgacgactatcctgccgatgcctggccggcctgcgcgaaccgactcgaagtg
gctgcacagtggatggacgaagcggccgtttccaccatccatagctggtgccagcggatg
ctgcgcgagcacgctttcgacagcggcagcctgtttacccagaccctggaaaccgatcac
agcgagctgctcggccaggtcatgcgcgattactggcggcgtttctgctatggcctggaa
ggtgatgcgctgcactgggtgcgggagaactggggcagtccggaccagcttctgccgcgg
gtgcgcgccctgttcggccggcactcggccgaggtacaggcgctggagccgcaagaggtg
atccgcgaagttctgcgccagcgcggcgagttgctgtgctccttgaaggccccctgggca
cagtggtcgcaggaattgctggaaatccttcgcgccgggatcaaggcaaagaccgtcaac
ggcagcatgatccaggagcgttatttcaaaccctggtgcgacaagcttctggcctgggcg
caggacgacctggcacatgatctcgatataggcaccggtttcacccggctgacgcccgac
ggcctggccgaagcctggaagagcgagccgccgagccatcctgcgctggaggtgatggtc
accctgcgcgaacagttgaaggcgctgccgaccccggatgcgcaactgctcgaacatgca
gccgcctgggtctcgcagcgcttcgaacaggaaaagcgccgccgcgccgagatgggcttc
gacgacatgctccagcgcctcgaccaggccttggccggccctgccggcgagcgtctggcc
ggcttgattcgcgagcagttcccggtggccctgatcgatgaattccaggacaccgacccg
gtgcagtaccgcatcttcgaatgcatctatcgcatcgaggacaacgcgcgcgataccggg
cttttcctcatcggcgaccccaagcaggcgatctacgccttccgtggtgccgacatcttc
acctaccttggcgcgcgccgggctaccgccgggcgcctgcacagcctggacaccaacttc
cgctcgacccagccgatggtgacggcggtcaaccatgtgttcatgaccgccgaacagcgt
caggaggggcgtgcagccttcctgttccgtgactcgcggggcgacaacccggtaccgttc
gttgcagtgaaggcccgtgggcacaaggagcacctgcaggtcgatggccagccgctgcca
gcgctgaccctctggcaccaggacagcgacacgccgctttccagcaccctgtatcgccag
atgatggccgcaggctgtgccacccgcatcgtccagttgctcaatggcggccagcagggc
cgtgccggtttcatccaggccgacggctccttgcgcggttgcctgccctcggatatcgcc
atcctcgtgcgggatggtcacgaggcgcagttggtgcgtgccgagctcgcggctcgcggc
gtgcgtagcgtctatctctccgacaaggactcggtattcgccgcccaggaagcccgcgac
ttgctgtcctggctcaaggcctgtgccgaaccggacaacgaacgcctgctcaaggctgcg
ctggccagccacaccctggcccagtcgctgtgtgccctggcccgtctcaacgaagacgag
atgctgtgggaagatcgcgtcatgcagttccgccagtatcgaatgatctggcggatccag
ggcgtgctgccgatgctgcggcacctgctgcatgacttccgcttgcccgggctgttgatg
agccgcactgatggcgaacgtgtgcttaccaacctcctgcacctctcggaactgctccag
caagccgcgaccgagctggacggcgagcaggcgctgatccggcacctggccgaacacctg
gcggcatccgggcaggccggcgaggagcagatcctgcgcctggaaagcgatgaacagctg
gtcaaggtggtcaccatccacaagtccaagggcctggaatacgagttggtgttcctgccc
ttcatctgtaccgccaagccggtggacggcaagcgcctgccgctgggctggcatgacgag
cagggtgtggcgcacctgaccctgagcccgagcgacgagcagatcgccatggccgacgat
gagcgtctggccgaggatctgcgcctgttctatgtggccctgacacgggcccggcacgcc
tgctggctgggcgtcgccgatctcaagcgcggtaccggcaaggaatcgctgttgcatcgc
agcgccttcggctacctgctcgggggcggtgagccgctggctgactcgaccgccctggcg
ggctggctcgatgacctgggcaaaggctgcgatgcgatcagccgcctgccgccacctgaa
gccgatgaccaggtttacgttcctgcgcgccagaccgccgaattgctggccccgcgtgag
ccgaaacgccgtgccgcagaaaactggtggatcgcttcctacagcgcactgcgcatcggt
gaggaggcgctggcgctcgatgccgatgtcgcccaggcccagcagttgctggacgacgag
cgtcccgacccgcatgccgcgcgcgaagtcatggcgaccgccggggatatccaccgtttc
ccgcgcggccccaaccccggcaccttccttcatggattgctggaatgggccggtcagcaa
ggtttcgaacgtgtcgcggctgcgcctggtgaactgcgccagatgattgcccagcgctgt
aaccgtcgcgactggaaaggctggatcaataccctcggcgactggctcgaacatttgctg
agcacgcccatgcctgttggaaatgaccgtagtccggtggtcctcggcgcattgggccag
taccagatcgaaatggagttctggttcgccagtcatcgcgtcgacgtgttgcagctcgac
cgcctggtggcccgccatacccatcagggcgctccgcggccagccgcccaggcagcgctg
ctcaatggcatgttcaagggcttcatcgacctggtcttcgagcacgatgggcgctactac
gtcgccgactacaaatccaactggctcggccccgacgaccttgcctacagcgaggcggcc
atggaagccgcgatcctcgagcaccgctacgacctgcaatatgtcctctacctgctcgcc
ctgcatcgccaactgcgcgcccggctgccggactacgactatgaccggcatatcggaggc
gccttgtatctgttcctgcgcggtgcgcattcaccaggccagggcgcgtacttcgtcaag
ccgccgcgcgcgttgatcgaagcgctcgacgcgctgttccgcggcgccccgcaaggggtg
caacaggacctgtttggagatgtcccatga
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