Pseudomonas sp. NyZ201: ACPFMA_26560
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Entry
ACPFMA_26560 CDS
T11215
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
psny Pseudomonas sp. NyZ201
Pathway
psny03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psny00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACPFMA_26560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psny03019
]
ACPFMA_26560
Enzymes [BR:
psny01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ACPFMA_26560
Messenger RNA biogenesis [BR:
psny03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACPFMA_26560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
XRQ38527
LinkDB
All DBs
Position
5911250..5913142
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AA seq
630 aa
AA seq
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MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPGGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKIYARDLKFVSACIFGGVGMN
PQVQAMARGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFIHDVKKVLAR
LPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRALL
AHLITAGAWEQVLVFTRTKHGANRLAEYLEKHGLTAAAIHGNKSQNARTKALADFKSGAV
RIMVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERVTRQKIPDGDLMGFDFAAVEAEKPEVREPRPQNNPRRGQRADGSNAGGRKDKGK
DKGKEKDSNKDARQSADKPAEKAAGGRQEPRKQRDRKPRQQQNAAQGAPVVPADRDPEEF
LDDDVDNFGNRADYVSPYQNKGGQGRNRRPGGQGGAGNGGGQARGGQPRSNGGGGANGEK
RGGSRNGGGAGGRDGQARRDGGSNNRNRRPARDDRQEPAVRSPREGQPQQNQPKIMHKES
KIDRFPSMEQLEQLPSRPRGEKPALLTRNR
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcatccctcggtctctccgaggctctagtccgcgctatcgaggcggcgggc
tacacccagcctactccggtgcaacagcgggccattcccgccgtgttgcaaggtcgcgac
ctgatggtcgcggcacagacaggtactggtaaaaccggcggcttcgccctgccgatcctg
gagcgcctgttccccggtggtcatccggacaagtcccagcgccatggcccgcgccagcca
cgggtactggtcctgacgccaacccgcgaactcgccgcccaggtccacgacagcttcaag
atctacgcccgcgacctgaaattcgtcagcgcctgcatcttcggtggcgtcggcatgaat
ccgcaggtgcaagccatggctcgcggcgtcgatgtcctcgtcgcctgcccgggtcgcctg
ctcgacctggccggccagggcagcgtcgatctcagccatgtcgagatcctggtcctggac
gaagccgaccgcatgctcgacatgggtttcatccacgatgtgaagaaggtcctcgcccgc
ctcccggccaagcgccagaacctgctgttctcggcgaccttctccaaggacatcaccgac
cttgccgacaagctgctgcataacccggaacgcatcgaagtcacgccgccgaacaccacg
gtcgagcgtatcgaacagcgcgtgttccgcctgccggccagccacaagcgcgccctgctg
gcgcacctgatcaccgccggcgcgtgggaacaggtgctggtcttcacccgcaccaagcac
ggcgccaaccgcctggccgaatacctggaaaagcacggcctgaccgctgccgcgatccac
ggcaacaagagccagaacgctcgcaccaaggccctggccgacttcaagtcgggcgccgtg
cggatcatggtcgccaccgatatcgccgcccgcggcctggatatcgaccagttgcctcac
gtggtcaacttcgaactgcccaacgtcgaggaagactacgtccaccgtatcggccgtacc
ggtcgtgcgggccgctccggcgaggccatctcgctggttgcgccggacgaggagaaactg
ctcaagagcatcgaacgtgtcactcgccagaagatcccggatggcgacctgatgggcttc
gacttcgccgcggtcgaggccgagaagccggaagtgcgcgaaccgcgtccgcagaacaac
ccgcgccgtggccagcgtgccgacggcagcaatgccggtggccgcaaggacaagggcaag
gacaagggcaaagagaaagacagcaacaaggacgcccggcagtccgcagacaaacctgcg
gagaaggctgccggtggccgccaggaaccgcgcaagcaacgggaccgcaagccgcgccag
cagcagaacgccgcgcaaggcgcgccggtcgttccagccgatcgtgatccggaagagttc
ctggacgacgacgtggacaacttcggcaaccgcgccgactacgtcagcccgtaccagaac
aagggcggccagggccgcaatcgtcgtccgggcggtcagggcggtgccggcaacggtggc
ggccaggctcgtggtggtcagccgcgcagcaatggcggtggcggtgccaatggcgagaag
cgtggtggttcgcgcaatggtggcggtgccggcggtcgtgatggccaggcgcgtcgcgat
ggcggcagcaacaaccgcaaccgccgcccggcccgcgacgaccggcaggagccggcagtg
cgcagcccgcgtgagggccagccgcagcagaaccagccgaagatcatgcacaaggaatcg
aagatcgatcgcttcccgtccatggaacagctggagcaactgccaagccgtcctcggggt
gaaaaaccggcgctgctgacccgcaatcgctga
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