Pseudomonas sp. NyZ201: ACPFMA_27125
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Entry
ACPFMA_27125 CDS
T11215
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
psny Pseudomonas sp. NyZ201
Brite
KEGG Orthology (KO) [BR:
psny00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psny03032
]
ACPFMA_27125
03400 DNA repair and recombination proteins [BR:
psny03400
]
ACPFMA_27125
Enzymes [BR:
psny01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
ACPFMA_27125
DNA replication proteins [BR:
psny03032
]
Prokaryotic type
DNA Topoisomerases
ACPFMA_27125
DNA repair and recombination proteins [BR:
psny03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
ACPFMA_27125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
XRQ41675
LinkDB
All DBs
Position
6029382..6030353
Genome browser
AA seq
323 aa
AA seq
DB search
MFRGKFAYFTPAGERVRAAEEIARINALAIPPAYTNVWICPDPDGHLQATGRDARGRKQY
RYHPRWREIRDADKYGSLLAFGKALPKLRATLQRHLARPEHSREKVMATVIHLLDETLIR
IGNARYAEQNRSYGLTTLRNRHVEVSGSTIRFHFRGKSGIEHEVSVNDRRLARIIKSCLE
LPGQQLFQYLDDNGERHSVTSSDINRYLQELTGAEFTAKHYRTWAGSALALTLLRELEWQ
PESAAKKHVVAIIKEVAAELRNTPAVCRKCYIHPAVIEAFHAGELANLRMAAPRKGLRAE
ESLLMRFLEKLTAKEASEKPTEG
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
atgttccgtggcaagttcgcctacttcacccctgccggcgagcgcgtgcgtgcggctgag
gagattgcccggatcaacgcgctggccatcccgccggcctacaccaacgtctggatctgc
cccgaccccgacggccatctgcaggcgaccggccgcgatgcccggggccgcaagcagtat
cgctaccacccgcgctggcgcgagatccgcgatgccgacaagtacggcagcctgctggcc
ttcggcaaggccttgcccaagctgcgcgctaccctgcaacgccacctggcccgccccgag
cacagccgcgagaaggtgatggcgaccgttatccatctgctcgacgaaaccctgatccgc
atcggcaacgcccgctatgccgagcagaatcgttcctacggcctgaccaccctgcgcaac
cgccatgtcgaggtgagcggcagtaccatccgtttccatttccgtggcaagagcggcatc
gagcatgaggtgagcgtcaacgaccgacgcctggcgcgcatcatcaagagctgcctggag
cttcccggccagcagctgttccaatacctggacgacaacggcgagcgccatagcgtgacg
tcgagcgatatcaatcgttatttgcaggagctgaccggtgccgagttcaccgccaagcat
taccgcacctgggccggcagcgccctggccctgaccctgttgcgcgagttggagtggcag
ccggaaagtgctgcgaagaagcatgtggtggcaatcatcaaggaagtggcggcggaactg
cgcaatactccggccgtatgccgcaagtgctatatccacccggcggtgatcgaggccttc
cacgcaggcgaactggcgaacctgcgcatggctgcgccccgcaagggcctgcgggccgaa
gaaagcctgctgatgcgcttcctggaaaagctgaccgccaaggaagcttcagaaaagccc
accgaggggtga
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