Psychrobacter sp. G: PSYCG_01645
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Entry
PSYCG_01645 CDS
T02715
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pso
Psychrobacter sp. G
Pathway
pso03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pso00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSYCG_01645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pso03019
]
PSYCG_01645
03009 Ribosome biogenesis [BR:
pso03009
]
PSYCG_01645
Enzymes [BR:
pso01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PSYCG_01645
Messenger RNA biogenesis [BR:
pso03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PSYCG_01645
Ribosome biogenesis [BR:
pso03009
]
Prokaryotic type
rRNA processing factors
PSYCG_01645
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AGP47905
LinkDB
All DBs
Position
complement(336062..340402)
Genome browser
AA seq
1446 aa
AA seq
DB search
MKRILINATQNEEIRVALCKGNHLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEY
GSQRQGFLPIREISAEYLSGNPRDENIKKLIKEGDELIVQVEKEERGNKGAALSTYVSLA
GRYLVLMPNNPRGGGISRQISGKLREDMKRMLGSLDLPKGMSVIIRTAGIGKTQEDLQHD
LNHLLNIWQAIQEQNQKYPSPRLVHQEAGVVTRAVRDYLRDDISEIWIDNENAYIEAAGF
IDAVMPKQAEKLRKYTDYEPMFSRFNIEKQIETAYQREVRLPSGGSIVIDQTEALVSIDI
NSAKSTKGSDVAETAYHTNLEAADEIARQLRLRDMGGLIVIDFIDMNDNKHQKEVEKRLI
DATKYDRARVQFGDISKFGLMEMSRQRLRPSLEESTGYICPRCHGNGMIRDLRSLSLSIM
RQIEQIALKERQGEVQAEVPTDIAAFLLNEKRDSLVYLEQDSGTRITILPHAHLESPNFK
LHFNRDGFAPSSYERITDTQLQEHSELGYNVDWQTAEKERPEQQPTRQPRQAADKNSSDQ
VQARPNVQQSTPTQQQQNSTSHSNEHRSNNNSSNVTSARAPQTKETPSVQNPQSSQNIVT
PSAPVAPQPTAIAAAQPQAVAWLSNLFAQAPQAQTTSSVSSRDAAEAIEALVNTGAQSLG
SFGQVDNTALANNDNSQNTATPQPATNQQSSNEQNRQLTRSAESSTDDSSDAEERRRRKP
RKSRPSKPRQRKEQADETENSATSNTTDSSASTDDKANNQDKRQQDNRRHNDRNRNNRQD
NNRNTNEDNANPTSVNATSVSDSSRSDSSDNVVEEQTRTKRKSNSQRGSRGKLERGETLT
AADSKQNNQQASKNANSNKHHSNARRNQDPNEVVLQVNEATSELKSPEVVHLSLDDSKSA
SRQATHKQAVIESDTDAENERSENNNEQRADKQKSVDNKPAQKTSKTIDTSSVASDNTQH
SSVQAKTSEKVSAHVNTTQIDQVEKSANPDKANQPTSKEDDKSGDKISSHKPAVDERANT
KISMDSEAENTASTQEVVAVQVEKAAPIETTQKAHVAENTAEENVVVDSNEVAAEDSSSQ
AVLELSRDSLFAERYVAANKFGQASNDPRVVRLQQVQASFAKASHANEQDAQASERAPTI
RGTVGEFIRATLAEAENRLATDGVISCFNAAIAKHLEQTPVKDSADKQVAIKPVAHSDFD
FSNYGYQPLAADYIARFESMTKAVSQFAASQGKTSVEPRAISKRASNDPRGQHPDYKESA
VLAVTDAANNEPVQTGIDIDAHEVEADALANQAQADAVSDQSKQLLDAEQKLAEVDTVQA
NIESTDIESIKSVENDIAEIKMTDVDAAEVANITVEQSENVQDAESIVAPSLKDDSQAAK
SKTTIASYKNMIENVAEQLLPQKGMFNLTTPKVPKARARKPKADHKKLTQAEKLESDDSD
NSDRES
NT seq
4341 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcattttaatcaacgccacccaaaacgaagagattcgtgttgccctctgtaaa
ggcaatcatctatacgatttcgatctcgaaaaccgtacccgcgaacaaaaaaaatctaat
atctataaaggtcatgtgacccgtgtcgagccctcgcttgaagcggtatttgtcgaatac
ggctcacagcgtcaaggcttcttgccgattcgtgaaatctctgccgaatatttaagcggc
aatccacgtgatgagaacatcaaaaagctgatcaaagaaggtgacgagctcatcgtccaa
gttgaaaaagaagagcgcggcaataaaggcgctgccctttcaacttatgtgtcattggct
ggtcgttatctggtattaatgccaaacaatcctcgcggtggtggtatctcgcgtcaaatc
tcaggcaaattgcgtgaagatatgaaacgtatgcttggcagcttagatctgccaaaaggc
atgagtgtcatcatacgtactgctggtattggtaaaacccaagaagacttacagcacgat
ttaaatcatttgctaaacatctggcaagccattcaagaacaaaaccaaaaatatccatca
ccgcgcctagtgcatcaagaagcgggcgtcgttacgcgtgctgtccgtgactatctacgt
gatgacatctctgagatttggattgataacgaaaacgcttatattgaagctgcgggcttt
atcgatgctgtgatgccaaaacaggctgaaaaactacgcaaatataccgattatgagccg
atgttttcgcgctttaatattgaaaaacagattgaaactgcttatcagcgtgaagttcgc
ctaccatcaggtggctcaattgttatcgatcagacagaagcattggtatctatcgatatc
aactctgctaagtctactaaaggttcagacgttgctgaaaccgcttaccataccaatcta
gaagccgccgatgagattgcccgtcaattgcgcctgcgcgatatgggcggtttgattgtc
attgatttcattgatatgaatgacaacaagcatcaaaaagaagttgaaaaacgtctgatt
gatgccaccaaatatgaccgtgcccgcgttcagtttggtgatatttccaagtttggtttg
atggaaatgagccgtcagcgcctgcgtccttcattagaagagtcaaccggttatatctgc
ccacgctgtcatggtaatggcatgattcgtgacctgcgttcattgtcattatctatcatg
cgtcagattgagcaaatcgcgctaaaagagcgtcaaggtgaagttcaagcagaagtaccg
actgatatcgcagcgtttttgctgaatgagaaacgcgacagcttggtctatcttgagcaa
gacagtggtacgcgtatcactattttgccgcatgcgcacttagagtcgccaaactttaaa
cttcactttaatcgcgatggctttgccccgtcaagctatgagcgtatcaccgatactcag
ctgcaagaacatagcgagcttggctacaatgttgattggcaaacggctgaaaaagagcgc
cctgagcaacagccaactcgacagcctcgtcaagctgcggataaaaatagcagcgatcaa
gtgcaggctcgtcctaacgtccagcaaagtacgcctacgcagcagcaacagaatagcacc
agtcatagcaatgaacatcgcagtaataacaatagtagcaatgtgacatcagcacgtgcg
ccacagactaaagagactccaagcgttcaaaaccctcagagctctcaaaacattgtgacc
ccatcagcgccagtagcaccacaacctactgctattgccgctgcacagccacaagcagtt
gcttggttgtctaatttatttgcgcaagcaccgcaagctcaaacgacatcaagtgttagt
agccgagacgcagctgaagctattgaagcattggtcaataccggagcacaaagtctaggc
tcgtttggccaagtggataatacggctttagcgaacaatgacaatagtcaaaatactgca
acgcctcagccagcaactaatcagcaaagtagtaatgagcagaatcgtcaactgacacgt
tctgctgagagtagtactgatgatagcagcgatgctgaagaaagaagaagacgtaaacca
cgcaaatcaagaccatctaagccgcgtcaaagaaaagagcaggcagatgaaactgagaat
agtgccactagcaatacgactgacagcagcgctagcactgatgacaaagctaataatcaa
gataaacgtcagcaggataatagacgtcataacgatcgtaatcgcaacaatcgccaagac
aataatcgtaatacaaatgaagacaacgctaatccgaccagtgttaatgcaaccagtgtc
agcgacagcagtcgttctgacagctctgataatgtagtagaagagcaaactcgtactaag
cgcaaatcgaacagtcaacgtggatcacgtggcaagcttgagcgcggtgaaactttaacg
gcagctgactctaagcaaaacaatcagcaagcctctaaaaatgctaacagcaacaaacac
cattctaatgcgcgtcgcaaccaagaccctaatgaagtagtattacaggtaaatgaagct
actagtgagctcaaatcaccagaagtggtacatttgtcattagatgatagcaagtctgca
tcacgccaagcgactcacaagcaagcagtaattgaaagtgatactgatgctgaaaatgag
cgttcagagaataataatgagcaacgtgcggataagcaaaagtccgtcgataacaaacca
gctcaaaaaacttctaaaacgattgataccagtagcgttgcatctgataacacacaacac
agtagcgtccaagctaaaacttctgaaaaagtctctgcacacgtcaatactactcagatc
gatcaagtagaaaaaagcgctaatcccgacaaagcgaatcaacccacttcgaaagaagac
gataaaagcggcgataaaattagtagccacaaacctgctgtagatgaacgagctaataca
aaaattagcatggacagtgaagccgagaatactgcatcaactcaagaagtggtagcggta
caagtagaaaaggcagcgccaatcgaaaccactcagaaggctcatgttgctgaaaatact
gccgaagaaaatgtggtcgtggattctaacgaagttgctgccgaggatagtagcagtcag
gcagtacttgagcttagccgtgattctttatttgctgaacgctacgttgcggcaaataag
tttggtcaagccagtaatgacccacgcgtcgtacgtcttcaacaggtgcaagcatcattt
gctaaagcgtctcacgcaaatgagcaggatgcgcaagctagtgagcgcgctcctaccatt
cgtggtacggttggtgaatttatccgtgcaaccttagcagaggcagaaaatcgcttagcg
acagacggtgtcatcagctgctttaatgctgctatcgctaagcatctagagcaaacgcca
gttaaagacagcgctgacaaacaagtggctattaaaccagttgctcatagcgactttgac
tttagtaactacggctatcagcctttagcagcggactacattgcacggtttgagtcaatg
acaaaagccgtcagtcagtttgcagcgtcccaaggtaaaacatcagtagagcctcgtgct
atcagtaaacgtgctagcaacgatccacgtggtcagcatcctgattataaagaatcagcg
gtattggctgtgactgatgcggcaaataacgagcccgttcaaacgggtatcgatattgat
gcgcatgaagtagaagccgatgctctggccaatcaagctcaagcagatgctgtcagtgat
caaagcaagcagttattagatgctgagcaaaaattagcagaagtagatacagtgcaagct
aatatcgagagcactgatatcgaaagtatcaaaagtgtcgaaaatgatatagctgaaatc
aaaatgaccgacgtcgacgctgctgaggttgcaaacattactgtcgagcaaagtgagaat
gtacaagatgctgaatcaatagtagcgccttctctgaaagacgacagtcaagcagccaag
tcaaaaacgaccatagccagttataaaaacatgattgaaaatgtggcagagcaattacta
ccacaaaaaggcatgttcaacttaacaacgcctaaagtaccaaaggctcgtgcccgtaag
ccaaaagctgaccataaaaagctgacgcaagctgaaaaacttgagtcagatgattcagat
aactcagatagagagagctaa
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