Psychrobacter sp. G: PSYCG_04100
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Entry
PSYCG_04100 CDS
T02715
Name
(GenBank) recombination protein RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pso
Psychrobacter sp. G
Pathway
pso03410
Base excision repair
pso03430
Mismatch repair
pso03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pso00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PSYCG_04100
03430 Mismatch repair
PSYCG_04100
03440 Homologous recombination
PSYCG_04100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pso03400
]
PSYCG_04100
DNA repair and recombination proteins [BR:
pso03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
PSYCG_04100
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
PSYCG_04100
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PSYCG_04100
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
5_3_exonuc_N
ANIS5_cation-bd
Motif
Other DBs
NCBI-ProteinID:
AGP48352
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Position
887013..888839
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AA seq
608 aa
AA seq
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MLNLTPRYTSTRIDELPAALQPLAAQSLTLARLYAARGIMQPDELETQLAGLLPAEQLKG
IIEAVDLVDIAIDDSQRILIVGDFDCDGATSTALMMRALTAMGAKVDFLVPDRFKYGYGL
TPEIVELGIKTYQPQMIVTVDNGISSHEGVARAQADGITVIITDHHLTTKETPPAEAVVN
PNQLDCTFASKALVGVGVAFYVLGRLAKLRRDAGKSTVQVSQYLDLVALGTIADVGVLDK
NNRILVHHGLAAIRQGRGSLGILALLEQAGRDPKKLQAQDFGFVLGPRINAAGRMDNMRI
GIECLLADDWATAQRLAQELEQLNRTRRQVEGEMRTQADNIVQALAATNISIEADVEESD
DIIVQHRLEKKSPNTRSIVLYQDDWHQGVIGIVAGRLKESHYLPSIVFAPADTERTGAED
AIKGSARSIAGVHIRDAIEQVAESHPDLISHFGGHAMAAGLTLKRGNFDAFVTAFNAVLA
QMEDEVFAEQKFTDGALQASDFSLWFAEHLAESSIWGHGFAPPIFDGVFEVLNFKVLKDK
HLKLSLRYPDVQYPIEAIQFNFDSSAWDYRAEKVHILFELDINEWNGKQSLQLMIKDLAL
VKETVEAN
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atgctaaatttaactccccgttataccagcactcgcattgacgagttgcccgccgcgttg
caaccacttgccgcccaatcactgacgcttgctcgcctatatgccgctcgcggtattatg
cagccagatgagcttgagactcagctggctggtttgctgcctgctgagcagctaaaaggt
atcattgaagcggtagatctagtagatatcgctattgatgacagtcagcgtattctgatc
gttggtgactttgactgtgatggcgcaaccagtacggcgcttatgatgcgcgccctgact
gccatgggtgccaaggttgattttctagtgcctgaccgttttaaatacggttatgggttg
acgccagagattgtcgaattgggtattaaaacttatcaaccgcaaatgattgtcacggta
gataatggtatctcaagccatgaaggcgtggcgcgcgcgcaggctgatggcattactgtc
attattacagaccatcatctcaccaccaaagagacaccgcctgctgaagcggtagtcaat
cccaatcagcttgattgcacttttgctagtaaagctttggtaggtgttggggtagcgttt
tacgtactcggaagactggcaaagctgcgccgcgatgctggcaaatctaccgtacaagtc
agtcaatatttggatttagtggcgcttggtacgattgctgatgtgggcgtacttgataaa
aacaatcgtattttggtccatcatggcttagcggctattcgtcaaggacgtggctctctt
ggcatactagcgttactcgagcaagcgggtcgagatcccaaaaaactacaggcgcaagat
tttggttttgtcttgggtccacgtattaatgcggctgggcgtatggataatatgcgcatc
ggtattgagtgcttgctagcagatgattgggcaacggcgcagcgattggcacaagagctt
gagcagcttaatcgtacgcgtcgccaagtagaaggtgagatgcgtacgcaagcggataat
atcgtccaagcattagctgctactaatataagtattgaagcggatgttgaagaaagcgat
gatattatcgttcagcataggcttgagaagaagagccctaatacccgcagtattgtgtta
tatcaagatgactggcatcaaggtgttatcggtatcgtcgcaggacgtttgaaagaaagc
cattatctgccgagcattgtctttgcgcccgcagatactgaacgtacaggtgctgaagat
gccatcaaaggctcagcacgttctattgctggcgtgcatattcgtgatgccattgaacaa
gttgccgagagccatcctgatttaatcagtcattttggcggtcatgccatggcagcagga
ctgacgttgaaacgaggtaactttgatgcctttgtgacagcatttaacgcggtgctggca
cagatggaggatgaggtattcgctgagcaaaaattcaccgatggtgctttgcaagcaagt
gattttagcttatggtttgctgagcatcttgcagagtctagtatttggggacatgggttt
gcgccaccgatatttgatggggtgtttgaagtgttgaactttaaagtgttaaaggataaa
caccttaaactgtcgctacgttatcctgatgtacagtatccgattgaggcgattcaattt
aattttgatagcagtgcttgggattaccgtgccgaaaaagtacatatattgtttgagctg
gacatcaatgaatggaatggtaaacaaagcttgcagttaatgataaaagatttggcgctg
gtaaaagagacggtcgaagcgaactag
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