Psychrobacter sp. G: PSYCG_05880
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Entry
PSYCG_05880 CDS
T02715
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pso
Psychrobacter sp. G
Pathway
pso02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pso00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PSYCG_05880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pso03021
]
PSYCG_05880
Transcription machinery [BR:
pso03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PSYCG_05880
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
AGP48699
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Position
complement(1321945..1323864)
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AA seq
639 aa
AA seq
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MNDKSVSKSTSQLATLIQMGKEQGYLTYAEVNDQLPDSITESDQIEDIVQMLTDVGIKIF
ESAPDADDILMNDDSSDDDMAADEAAAVLASVETEPGRTTDPVRMYMREMGTVDLLTREG
EIAIAKRIEEGIRDVQHAMSYWPGTVQFVLDEYQKVQDGEKKLSDVITGFLDPETEEDKI
AAQEAKEAAKEERERIKEEKENPPIIKEKAKVKSGLDDDEEDDEEVEEDAEEETSGIDPE
EVRLRLEEIEHLFIKAKQALLDYGRGSTQANEAYEQLASRFMMLKLNNRLSDQVMAIMHD
VYDDVRKHERQIMRLVIRRGRMPREEFRKTFPSNETNVDWLIERIKGKPAFAATLEKVAD
DVILLQRAIRDYEHKLEMEIHDMKDVARRMAIGEAKARRAKKEMVEANLRLVISIAKKYT
NRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVH
MIETINKINRVSRQLLQEMGREPTPEELGERLEMDEAKVRKVLKIAKEPISMETPIGDDE
DSHLGDFIEDGTISSPVDDATAAGLREATRDVLGNLTEREARVLKMRFGIDMPTDHTLEE
VGKQFDVTRERIRQIEAKALRKLRHPSRSEHLRSFLEND
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atgaacgataagtcagtttctaagtccacatctcaactggccaccttaatccaaatgggt
aaagagcaagggtatttaacctatgctgaggtgaatgaccaactgcccgactctattacc
gaaagcgatcagatcgaagatattgtacaaatgctaaccgacgttggcatcaaaatcttt
gaatctgcgcctgatgccgatgacatcttgatgaacgacgattcaagtgatgatgacatg
gcagcggatgaggcagcggcagtactagcctctgttgaaaccgaacctggtcgcaccact
gaccctgtgcgtatgtatatgcgtgagatgggtacggttgatctattaacgcgcgaaggc
gagattgccattgccaagcgtatcgaagaaggtattcgtgacgtacagcatgccatgtct
tactggccgggtacggtacagttcgtccttgacgagtaccaaaaagtccaagatggcgag
aaaaaactttctgacgttatcactggtttcttagaccctgaaaccgaagaagacaaaatc
gctgctcaagaagccaaagaagcagcgaaggaagaacgcgagcgcatcaaagaagaaaaa
gaaaatccgccgatcatcaaagaaaaagccaaagtaaaatctgggcttgatgatgacgag
gaggacgacgaggaagtggaagaggacgctgaagaagaaaccagcggtatcgatccagaa
gaagtgcgcctgcgtctagaagagatcgagcatctatttattaaagccaagcaagcctta
cttgattatggtcgtggtagcacccaagccaatgaagcttacgagcaactggctagccgc
tttatgatgctaaagctgaataaccgtctatctgatcaagtcatggccatcatgcatgat
gtttatgatgacgtgcgtaagcatgagcgtcaaatcatgcgcttggtgattcgccgtggt
cgtatgccgcgcgaagagttccgtaagacttttccaagtaatgaaaccaacgttgattgg
ttgattgagcgtattaaaggtaagcctgcttttgctgccacgttagagaaagtcgccgac
gatgttatcttgttacaacgtgctatccgtgattacgagcataagcttgagatggaaatc
cacgacatgaaagatgtggcgcgccgtatggctattggtgaagccaaagcccgccgtgcc
aaaaaagagatggtcgaggctaacttacgtctcgttatctcaattgccaaaaaatatacc
aaccgtggtttgcagttcttggatttgattcaagaaggtaatatcggcttgatgaaagcc
gtcgataaatttgaatatcgccgtggttataagttttcaacttatgcgacttggtggatt
cgtcaggcaatcacccgctctatcgctgaccaagcacgtaccatccgtatccctgtgcat
atgattgagacgattaataagatcaatcgtgtctctcgtcaattgctacaagaaatggga
cgcgagccaacgcctgaggaattaggcgaacgcttagagatggacgaagccaaagtccgt
aaagtactaaaaatcgccaaagagcctatctcaatggagacgcctatcggtgatgatgaa
gattcgcacctaggtgattttatcgaagatggcacgatctcaagccctgttgacgatgcg
acggctgctggtctacgtgaagcgacgcgtgatgtattaggcaacttgactgagcgtgaa
gcacgcgtgctcaaaatgcgttttggtatcgatatgccgaccgaccatactttggaagaa
gttggcaagcagtttgatgtgacgcgtgagcgtattcgtcagattgaagcaaaagcattg
cgtaaattgcgtcatccatcacgctctgagcatctgcgctctttccttgaaaatgactga
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