Psychrobacter sp. G: PSYCG_13110
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Entry
PSYCG_13110 CDS
T02715
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pso
Psychrobacter sp. G
Pathway
pso03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pso00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSYCG_13110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pso03019
]
PSYCG_13110
03016 Transfer RNA biogenesis [BR:
pso03016
]
PSYCG_13110
Enzymes [BR:
pso01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
PSYCG_13110
Messenger RNA biogenesis [BR:
pso03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PSYCG_13110
Transfer RNA biogenesis [BR:
pso03016
]
Prokaryotic type
tRNA degradation factors
PSYCG_13110
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
OB_Dis3
HTH_24
MarR
Motif
Other DBs
NCBI-ProteinID:
AGP50069
LinkDB
All DBs
Position
3010495..3012807
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AA seq
770 aa
AA seq
DB search
MSWNDPNASSEAQKYDNPIPSRELILSTINEHGEITHQQLAKAFNIADPDQFDALGNRLK
AMTRDGQVNRDGRPYRYRTVTQHDIVTGTVTAHPKGFGFVLLSDMPDLFLHEKQMRWVFN
GDTVEAVGTSTDNRGRTEGRIVDVVERRQNHFIGTLAHDEDGYCVELGSPNNHQPITVTE
DNVQAFNAKQGSPVKVDIIDWPNQHEFATGKITEVLSDDNDRELIIETTLLNYDIPSEFS
EAALNQANDYKEPTEKDLKGRVDLRELPLVTIDGEDARDFDDAVFAEKRSGGNYRVLVAI
ADVSYYVTPNSPLDQNAYERGTSVYFPHQVIPMLPEVLSNGLCSLNPNLDRLCMVADIKI
SRAGKITSYEFYPGVMHSQARLTYNQVNAYLENPKDSSVPKSLTENKEVKKSVDTLHQLY
ELLLKKREERHAMEFETVETYIKFNEKGGIEAILPRTRGDAQKLIEECMLLANTCAANFA
LKNELPVLYRNHDKPDGEKSMRIHEYAKNFGLSFPEENPTQADYQRIIEATKERPDAISI
HSMLLRSMMQANYSPDNIGHFGLAYDEYSHFTSPIRRYPDLMLHRAIKAKVTNAKQPVMD
FSLEGAGMQTSDTERRAEKASRYVESWLKCHYMKDHVGEEFDGVVTTVTNFGLFITLTDL
YIDGLVHISNVGDDFFVYDEQQQQLIGKDRGTVFGLGDLVKVKVAGVNMDLLQIDFGLQA
KLHSSKMNQTKKDHSNASQPNRSSTSKDQPKKSPAKRSGSRGGRGSSKKS
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atgagttggaatgatccaaacgcctcaagtgaggcacaaaaatatgataacccgattcct
agtcgcgagcttatattaagcacgattaatgaacacggtgaaatcacccatcagcaattg
gcaaaagcctttaatattgctgatcctgaccagtttgacgctttgggcaaccgcctaaaa
gcgatgacacgcgatggacaagtcaatcgtgacggtcgcccttatcgctatcgtacagtc
actcagcacgacatcgtcaccggtacagtaacagcccatccaaagggctttggctttgta
ttattaagtgatatgcctgacctattcttgcatgaaaaacaaatgcgttgggtctttaat
ggcgatacagtagaagccgttggcacgtcaacagacaaccgcggtcgtactgaaggtcgt
atcgttgatgtcgttgagcgtcgtcaaaatcattttatcggtacgctggctcatgatgaa
gacggttactgcgttgagcttggtagcccaaataaccatcagccgattaccgttacagaa
gacaatgtacaggctttcaatgctaagcaaggctcgccggtaaaagttgatattattgat
tggccaaatcagcatgaatttgccacgggcaaaattactgaagtcttatctgatgacaat
gatcgcgaactgatcattgagactacgttacttaattatgatattccatcagagttcagt
gaagcggcgctcaatcaagcaaatgattataaagagccgactgaaaaagatctaaaaggt
cgtgtcgacttacgtgagttgccattagtgacgatcgatggtgaagatgctcgtgatttt
gatgatgctgtgtttgcagaaaagcgttctggtggtaattatcgcgtcttggtagcgatt
gcggatgtcagttattatgtgacaccgaactcgccacttgatcaaaatgcctacgagcgt
ggtacgtcagtatatttcccgcatcaagtgattcctatgttgcctgaagtactgtctaat
ggtctctgttcgctgaaccctaatcttgatcgcctctgtatggttgccgatattaagata
tcacgtgctggtaaaatcaccagttatgagttttatcctggcgtcatgcactcgcaagcg
cgcttgacttataatcaagtgaacgcttatcttgagaatccaaaagacagtagcgttcca
aaatcgttgacagaaaataaagaggtcaaaaaatctgtcgataccttacatcaattgtat
gagctactcctcaaaaagcgtgaagagcgtcatgcgatggagtttgagaccgttgaaact
tatattaagttcaatgaaaaaggtggtatcgaagccatcttgcctcgtacgcgcggtgat
gcgcaaaagcttatcgaagaatgcatgttacttgccaatacctgtgcagcaaactttgcg
ctaaaaaacgagctgcctgtgttatatcgtaatcatgataagcctgatggcgaaaagtcg
atgcgtatccatgaatatgccaaaaactttggtctaagcttcccagaagaaaatcctact
caagcggattatcaacgtatcattgaagcgactaaagagcgtcctgacgctatcagtatt
catagcatgctgttacgttcgatgatgcaagcgaactattcacctgacaatatcggtcac
tttggtttggcttacgacgagtatagtcattttacctcgccgattcgtcgttatcctgac
ttaatgttgcatcgtgcgatcaaggcgaaagtgacaaatgccaaacagcctgtgatggat
ttttcattggaaggtgctggcatgcaaacctcagatactgagcgccgtgctgaaaaggct
tcacgctacgtagaatcatggctcaaatgtcattatatgaaagatcatgtcggcgaagag
ttcgatggtgtcgtaactaccgtcacaaactttggtttatttattactctgacggatttg
tatattgatggtttggtgcatatctcaaacgttggtgacgatttctttgtttatgatgag
cagcagcaacagcttatcggtaaagatagaggcacagtgtttgggctgggcgatttggtt
aaagtgaaagtagctggtgttaatatggatctgctacaaattgactttggtttacaagca
aagctgcactctagtaaaatgaatcaaactaagaaagatcattcaaacgctagtcagcca
aaccgcagctccacaagcaaagatcagccaaagaaatcacctgcgaagagaagcggcagt
cgtggtggtagaggcagtagtaaaaagagctaa
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