Pseudomonas solani: PSm6_06650
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Entry
PSm6_06650 CDS
T09213
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
psoa
Pseudomonas solani
Brite
KEGG Orthology (KO) [BR:
psoa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
psoa03009
]
PSm6_06650 (rlmD)
Enzymes [BR:
psoa01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
PSm6_06650 (rlmD)
Ribosome biogenesis [BR:
psoa03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
PSm6_06650 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRAM
Cons_hypoth95
MTS
Methyltransf_11
Methyltr_RsmB-F
Methyltransf_23
TRM5-TYW2_MTfase
PCMT
RrnaAD
Methyltransf_15
Ubie_methyltran
PrmA
Motif
Other DBs
NCBI-ProteinID:
BCD84258
LinkDB
All DBs
Position
complement(698716..700071)
Genome browser
AA seq
451 aa
AA seq
DB search
MAKRSGGLRFQPSGGSRPAQQVPTGKKQRLAIERLANDGRGIAFVDGRTWFVSGALPGEE
VESRVLGARAQIVEARAEKVLVASPLRRVEPCAHAGQCGGCTLQHLPHAEQLALKQRTLA
EQLARFAGLEPEAWAAPLVGPELGYRRRARIAVRWDAKAARLDVGFRAAASQLIVGIDDC
AVLVQPLQSIVRALPQLLRSLERPQALGHVELFHGNASSLLLRHTQSLGEADLQRLRHFC
AEHQAQLWLHGAGEPQPDDAAARLGYRLEQWGLELEYRPGDFVQVNAVVNEAMVAQALDW
LAPQASERVLDLFCGLGNFALPLARQAREVVAVEGVDVMVQRARGNAVTNGLENAHFFQA
DLSKPLAEARWAAQGFDAVLLDPPRDGAFEIARHLGELGAKRVVYVSCNPATLARDSAEL
VRQGYRLRRAGILDMFPQTAHVEAMALFEAG
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcgtagtggtggcctgcggttccagcccagtggcggctcgcgcccggcgcag
caggtgcccaccggcaagaagcagcgcctggccatcgagcgcctggccaacgatggccgc
ggcatcgcctttgtcgacggacgcacctggttcgtttccggcgcgctgccgggcgaagag
gtggagagccgtgtgctcggtgcccgcgcccagatagtcgaagcccgagcggagaaggtg
ctggtcgccagcccgctgcgccgcgtcgagccttgtgcccacgccggccagtgcggcggt
tgcaccctgcagcacctgccccatgccgagcagcttgccctgaaacagcgcacgctggcc
gaacagctggcgcgcttcgccgggctcgagcccgaagcctgggccgcgccgctggtgggg
cccgagttgggctaccgccgccgcgcgcgcattgccgtgcgctgggacgctaaggccgcg
cgcctggatgtgggcttccgcgccgccgccagccagttgatcgtcggcatcgacgattgc
gccgtgctggtacagcccttgcagtccatcgtccgtgcgttaccgcaactgctgcgcagc
ctggaaaggccgcaagccctcggtcatgtcgagctctttcacggcaatgcctcgtcgctg
ctgctgcgccatacccagtcactgggtgaggcggacctgcagcgcctgcgtcatttctgc
gccgaacaccaggcccagctgtggctccacggtgcgggcgaaccgcagccggacgatgcc
gccgcgcgcctgggttaccgtttggaacaatggggcctggagctggaataccgaccaggg
gatttcgtccaggtcaacgccgtggtcaacgaagcgatggtcgcccaggcgctagactgg
ttggcaccacaggcttccgagcgggtgctggacctgttctgcgggctcggcaatttcgcc
ctgccactggcgcgccaggcgcgcgaagtggtggcggtggaaggtgtggacgtcatggtc
caacgcgcccgcggcaatgctgtaaccaatggtttggagaatgcgcactttttccaggcc
gacttgtcgaagccgctggccgaggcccgttgggctgcccagggcttcgatgcggtactg
ctggacccgccgcgcgatggcgcgtttgagatcgcccgtcaccttggcgagctcggcgcg
aaacgcgtggtgtatgtgtcctgcaacccggcgacgctggcacgtgacagtgccgagctg
gtccgacagggttatcggctcaggagagccggcatcctcgacatgtttccgcagacggcc
catgtcgaggccatggcgttattcgaggcgggctag
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