Pseudomonas solani Sm006: PSm6_10170
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Entry
PSm6_10170 CDS
T09213
Name
(GenBank) RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
psoa
Pseudomonas solani Sm006
Pathway
psoa02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
psoa00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PSm6_10170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psoa03021
]
PSm6_10170
Transcription machinery [BR:
psoa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PSm6_10170
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
Sigma70_ECF
HTH_24
HTH_IclR
PhyR_sigma-like
HTH_23
HTH_40
HTH_7
Xre-like-HTH
GerE
HTH_11
HTH_28
HTH_Tnp_ISL3
HTH_36
HTH_AsnC-type
Sigma70_r3
HTH_10
TnsD
DUF2774
Motif
Other DBs
NCBI-ProteinID:
BCD84610
UniProt:
A0ABN6BQ43
LinkDB
All DBs
Position
1078968..1079477
Genome browser
AA seq
169 aa
AA seq
DB search
MTSSQAAPEQALHKLYSDHNGWLRNWLQRKLGCPQSAADLAQDTFLKVLLGREAHRILEP
RAFLTTIAKRVLANHYRRQDIERAYLQALAALPEEEVPSEETRAIILETLMELDRLLDGL
APLAKKVFLLAQVDGCTYNEIAEQLGLSLSSVKRYMAKAAERCYFAECL
NT seq
510 nt
NT seq
+upstream
nt +downstream
nt
ttgaccagcagccaggccgcccccgagcaggcgttgcacaagctctacagcgaccacaac
ggctggctccggaattggctgcagcgcaagctcggctgcccgcagagcgccgccgacctg
gcccaggacaccttcctcaaggtgctgctggggcgcgaggcgcaccgcattctcgaaccg
cgcgccttcctcaccaccatcgccaagcgcgtgctggccaaccactaccgccgccaggac
atcgagcgcgcctacctgcaggccctcgccgcgctgccggaagaggaagtgcccagcgag
gaaacccgcgccatcatcctggaaaccctgatggagctggaccgcctgctcgacggcctg
gcccctctggcgaaaaaggtcttcctgctggcccaggtggacggctgcacctacaacgag
atcgccgagcagctcggcctctccctttccagcgtcaagcgctacatggccaaggccgct
gagcgctgctacttcgcggagtgcctctga
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integrated database retrieval system