Pseudomonas solani Sm006: PSm6_14510
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Entry
PSm6_14510 CDS
T09213
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
psoa
Pseudomonas solani Sm006
Pathway
psoa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psoa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSm6_14510 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psoa03019
]
PSm6_14510 (rnr)
03016 Transfer RNA biogenesis [BR:
psoa03016
]
PSm6_14510 (rnr)
Enzymes [BR:
psoa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
PSm6_14510 (rnr)
Messenger RNA biogenesis [BR:
psoa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PSm6_14510 (rnr)
Transfer RNA biogenesis [BR:
psoa03016
]
Prokaryotic type
tRNA degradation factors
PSm6_14510 (rnr)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
OB_Dis3
TRAM_2
Motif
Other DBs
NCBI-ProteinID:
BCD85044
UniProt:
A0AAU7Y488
LinkDB
All DBs
Position
complement(1549758..1552580)
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AA seq
940 aa
AA seq
DB search
MADWQNLDPEAAREAEKYENPIPSRELILQRLDERGAPANREQLVEEFGLTTEDQLEALR
RRLRAMERDGQLIYTRRGTYAPVDKLDLICGRISGHRDGFGFLIPDDGSDDLFLSPAQMR
LVFDGDRALARVSGLDRRGRREGALVEVIERAHETLVGRFFEESGIARVVADNPKIQQEV
LVPQGKQGSAKHGQFVQVKIEQWPSNFRVAQGEVVEVLGDYMAPGMEIEVALRSYDIPHE
WPEAVVKEAAKLKPEVAEKDKEKRIDLRGLPLVTIDGEDARDFDDAVYAEARKGGGWRLF
VAIADVSHYVKVGSALDEEAAKRGNSVYFPEKVIPMLPEALSNGLCSLNPLVDRLAMVCE
MTLSRAGKMTGYEFYEAVIHSHARLTYNKVSQLLETPDSIEGKQLAEQMPQVVPHLQQLY
KLYKVLLAARQVRGAIDFETQETRIVFGADRKIAEIRPTQRNDAHKLIEECMLCANVATA
RFMQDHDIPSLYRVHDGPPAERLDKLRLFLGELGLTLNRGKGEPTPSDYQALLETIRGRP
DYHLIQTVMLRSLSQAVYSADNQGHFGLNYDAYTHFTSPIRRYPDLLVHRAIRSVVRSKR
ETVHVKRAGATAMVKARIYPYDEAALEKLGEQCSMTERRADEATRDVTNWLKCEYMRERV
GETFPGVISAVTGFGLFVELTDIYVEGLVHVTALPGDYYHFDPIHHRLAGERSGRSFRLG
DTIEVLIARVDLDERKIDFELAENPLNAPGGRKKRGAEKSAPAPEVKPAKGSKTRSRGSK
PAALAKKAAARDPQPEQLAPGVAVAPRRSKAGKVQALPAVSPEILAQADEMLGNTDVNRS
RALKQALLSEARHGGEKPRGGKPQGGKAQSRPAKGAPFGAGGQDPAAKDRDAKPGNKPGS
KPSGGKPKKAKPASKPGKPTKHRKGPPKTKAAGGSDKVKP
NT seq
2823 nt
NT seq
+upstream
nt +downstream
nt
atggccgattggcaaaacctcgatcccgaggccgcccgcgaggcggaaaagtatgaaaac
cccatccccagccgcgagctcatcctgcagcgtctcgatgagcgtggcgccccggccaac
cgcgagcagttggtcgaagagttcggtctgaccaccgaagaccagctggaggccctgcgt
cggcgcttgcgcgccatggagcgggacggccagcttatctatacgcgccgtggcacctat
gcaccggtcgacaagctcgacctgatctgcggccgcatcagcggccaccgcgacggtttc
ggcttccttattcccgatgacggcagtgacgacctcttcctcagccccgcgcagatgcgc
ctggtgttcgacggcgaccgcgccctggcgcgcgtatccggcctcgaccgccgtggccgc
cgcgaaggcgcgctggtggaagtgatcgagcgcgcccatgaaaccctggtcggccgcttc
ttcgaagaaagcggcatcgcccgcgtggtggccgacaacccgaagatccagcaggaagtg
ctggtgccccagggcaagcagggcagcgccaagcacggccagttcgtgcaggtgaagatc
gagcagtggccgagcaacttccgcgtcgcccagggcgaagtggtcgaggtgctgggtgac
tacatggcgccgggcatggagatcgaagtcgccctgcgcagctacgacatcccccacgaa
tggcccgaggccgtggtcaaggaagccgccaagctgaaaccggaagtggccgagaaggac
aaggaaaagcgcatcgacctgcgcggcctgcctttggtgaccatcgatggcgaagacgcc
cgtgacttcgacgacgccgtctatgccgaagcccgcaagggtggcggctggcgcctgttc
gtggccatcgccgacgtttcccactatgtaaaggtgggctcggcgctggacgaagaggcc
gccaagcgcggcaactccgtgtacttccccgagaaggtcatcccgatgctgccggaggcg
ctgtccaacggcctctgctcgctgaacccgctggtcgatcgcctggccatggtctgcgag
atgaccctgtcccgcgcgggcaagatgaccggctacgaattctacgaagcggtgatccac
tcccacgcgcgcctgacctacaacaaggtcagccaactgctggaaaccccggactccatc
gaaggcaagcagcttgccgagcagatgccccaggtcgttccgcacctgcagcagctctac
aagctctacaaggtgctactggcagcgcgccaggtgcgcggcgccatcgatttcgaaacc
caggagacgcgcatcgtcttcggcgccgatcgcaagatcgccgagatccgcccgacccag
cgcaacgacgcccacaagctgatcgaggaatgcatgctctgcgcgaacgtggccaccgcc
cgtttcatgcaggaccacgacatcccctccctctaccgtgtgcacgacggcccgccggcc
gagcgcctggacaagctgcgcctgttccttggtgagctgggcctgaccctcaatcgcggc
aagggcgaaccgaccccgagtgattaccaggccctgctggaaactattcgcggacgcccg
gactaccacctgatccagaccgtgatgctgcgctccctgagccaggcggtgtacagcgcc
gacaaccagggccacttcggcctcaactacgacgcctacacccacttcacctcgccgatc
cgccgttatccggacctgctggtgcaccgtgccatccgtagcgtggtccgctccaagcgc
gagactgtgcacgtcaagcgtgccggcgccacggccatggtcaaggcgcgtatctacccg
tacgacgaggccgccctggagaagctcggcgagcagtgctcgatgaccgagcgccgcgcc
gacgaagccacccgtgacgtcaccaactggctgaagtgcgagtacatgcgcgagcgcgtg
ggcgagaccttccccggggtgatctcggcggtgaccggcttcggcctgttcgtcgaactg
accgacatctatgtagaaggcctggtgcacgtcaccgcattgccgggtgactattaccac
ttcgacccgatccaccaccgcctggcgggtgagcgcagcggtcgcagcttccgcctgggc
gacacgatcgaagtactgatcgcgcgcgtcgacctggacgagcgcaagatcgacttcgag
ctggccgagaatcctcttaatgcaccgggcggccgcaagaagcgcggtgccgagaagtcc
gcgcccgcacccgaggtcaagccggccaaaggttccaagacccggagccgcggcagcaag
cctgcggccctggcgaagaaggccgccgcacgcgacccgcagcccgagcaactggcccca
ggcgttgccgtggcgccgcgccgcagcaaagcgggcaaggtccaggcactgccggccgta
tcgccggaaatcctcgcccaggccgacgaaatgcttggcaacaccgacgtcaaccgcagc
cgcgcgttgaaacaggcgttgctcagcgaggcgcgtcatgggggtgaaaagccccgtggt
ggcaagcctcaaggcggcaaggcccagtcccgtcccgccaagggggcgcctttcggtgcc
ggtggccaggatccggccgccaaggatcgcgacgccaagccgggcaacaagccaggcagc
aaaccaagcggcggcaagccgaagaaggccaagccggcgagcaagcccggcaagccgacc
aagcaccgcaaaggaccgcccaagacgaaagccgctggcggcagtgacaaggtcaaacca
tga
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