Pseudomonas solani: PSm6_27060
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Entry
PSm6_27060 CDS
T09213
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
psoa
Pseudomonas solani
Pathway
psoa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psoa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PSm6_27060 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psoa03021
]
PSm6_27060 (rpoC)
03400 DNA repair and recombination proteins [BR:
psoa03400
]
PSm6_27060 (rpoC)
Enzymes [BR:
psoa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PSm6_27060 (rpoC)
Transcription machinery [BR:
psoa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PSm6_27060 (rpoC)
DNA repair and recombination proteins [BR:
psoa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PSm6_27060 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF3150
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
BCD86299
LinkDB
All DBs
Position
2985321..2989520
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQIEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMGHIELASPVAHIWFLKSL
PSRIGLLLDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFESLEEFGDDFDARM
GAEAVRELLNAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNHPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEARGMATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAVNAKGEGRVFADLQEVDRVFRAG
EASLHARVKVRINETVNDRDGSVTKNTRIVDTTVGRALLFQVVPAGLSFDVVNQPMKKKA
ISKLINQCYRVVGLKDTVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIDAATEE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVVDREGKEVDQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTEQGLLMTPHIEGGDVVEPLGERVL
GRVIARDVFKPGSDEVIVPAGTLVDEQWVEFIERASIDEVIVRSPISCETRYGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADNVQVKNGGTIRL
HNLKHVENLNGHLVAVSRSGELAIADDFGRERERYKLPYGAVISVKEGDKVDPGAIVAKW
DPHTHPIVTEMKGTVTFVGMEEGITIKRQTDELTGLTNIEVLDPKDRPAAGKDIRPAVKL
VDANGKELLLPGTDVPAQYFLPANALVGVADGAQVGVGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEPSILAEISGTISFGKETKGKRRLVITPTDGSDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSNPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEIAESGDSSFIKGDQMELTQVLEENERLATEDRFIAKFERVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRQREAGKPVR
VSASEVEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacttgctgaatctgttgaaaaaccagggtcaaatcgaagagttcgatgccatc
cgtattggcctggcctcgcccgagatgatccgctcctggtccttcggtgaagtgaagaag
ccggagaccatcaactaccgtaccttcaagccggagcgcgatggcctgttctgcgccaag
atcttcggcccggtgaaggactacgagtgcctgtgcggtaagtacaagcgcctgaagcac
cgcggtgtgatctgcgagaagtgcggcgtcgaagtcgccctggccaaggtgcgccgcgag
cgcatgggccacatcgagctggcttcgccagtcgcccacatctggttcctgaagtccctg
ccgtcccgtatcggccttctgctggacatgaccctgcgtgacatcgaacgcgtgctctat
ttcgagagctacgtggtgatcgatccgggcatgaccaccctcgagaagggccagctgctg
aacgacgagcagtacttcgaatccctcgaagagttcggtgacgacttcgacgcccgcatg
ggtgccgaggctgttcgcgagctgctgaatgccatcgacctggagcacgagatcggtcgc
ctgcgtgaagagattccgcagaccaactcggaaaccaagatcaagaagctgtccaagcgc
ctgaagctgatggaagccttccagggctccggcaaccatcccgagtggatggtgctgacc
gtcctgccggtgctgccgccggacctgcgtccgctggttccgctggatggcggtcgtttc
gcgacttcggacctgaacgatctgtaccgtcgcgtcatcaaccgtaacaaccgcctgaag
cgcctgctcgacctggctgctccggacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaagctgtcgacgccctgctggacaacggccgtcgtggccgtgccatcaccggctcgaac
aagcgcccgctgaaatccttggccgacatgatcaagggtaagcaaggtcgcttccgtcag
aacctgctcggtaagcgcgtggactactccggtcgttccgtgatcaccgtgggcccgacc
ctgcgcctgcaccagtgtggcctgccgaagaagatggccctcgagctgttcaagccgttc
attttcggcaagctcgaagcccgtggcatggccaccaccatcaaggcggccaagaagatg
gtcgagcgcgaactgcccgaggtctgggacgttctcgccgaagtcatccgcgaacacccc
gtgctgctcaaccgcgcaccgaccctccaccgtctgggtatccaggcgttcgagccggtg
ctcatcgaaggcaaggcgatccagctgcacccgctggtctgcgcggcgtacaacgccgac
ttcgacggtgaccagatggccgttcacgtcccgctgaccctcgaggcccagctggaagcg
cgcgcgctgatgatgtccaccaacaacatcctgtcccccgccaacggcgagccgatcatc
gtgccgtcgcaggacgtggtactgggtctgtactacatgacccgtgaagcggtgaacgcc
aagggtgaaggtcgcgtattcgctgacctgcaggaagtcgaccgcgtattccgcgctggc
gaagcgtccctgcacgcccgcgtgaaggtccgtatcaacgagaccgtgaacgaccgcgac
ggctccgtcaccaagaacacccgcatcgtcgacaccactgtcggccgcgcgctgctgttc
caggtggttccggccggcctgtcgttcgacgtggtcaaccagccgatgaagaagaaggcg
atctccaagctgatcaaccagtgctatcgcgtggttggcctgaaggacaccgtcatcttc
gccgaccaactgatgtacaccggttttgcctactccaccatttccggcgtctcgatcggt
gtgaacgacttcgtcatcccggatgagaaggcccgcatcatcgacgcggccaccgaggaa
gtgaaagagatcgaatcccagtacgcctccggcctggttacccagggcgagaagtacaac
aaggtgatcgacctctggtcgaaggcgaacgacgaagtgtccaaggcaatgatggccaac
ctctcgaaagagaaggtggtcgatcgcgagggcaaggaagtcgatcaggagtccttcaac
tccatgtacatgatggctgactccggtgcgcggggctccgcggcccagatccgtcagctc
gccggtatgcgtggcctgatggccaagccggacggctccatcatcgaaacccccatcacc
gcgaacttccgtgaaggcctgaacgtactccagtacttcatctccactcacggtgctcgt
aaaggtctggcggataccgcactgaagaccgcgaactccggttacctgactcgtcgtctc
gtcgacgtggcccaggacctggtagtgaccgagatcgactgcggcaccgaacagggcctg
ctgatgactccgcatatcgaaggcggcgacgtggtcgagcctctgggcgagcgcgtactg
ggtcgagtgatcgcccgtgacgtgttcaagccgggttcggacgaagtcatcgtcccggcc
ggtaccctggtcgacgaacagtgggtcgagttcatcgagcgtgccagcatcgacgaagtg
atcgtgcgttcgccgatcagttgcgaaacccgctacggcatctgcgccaagtgctacggt
cgcgacctggctcgtggtcaccaggtgaacatcggtgaagcggtcggcgtcatcgccgcc
cagtccatcggtgagccgggtacccagctgaccatgcgtaccttccacatcggtggtgcg
gccagccgtacttccgcagccgacaacgtccaggtcaagaacggcggtaccatccgcctg
cacaacctgaagcacgtcgagaacctcaacggtcacctggttgccgtttcccgttccggc
gagctggccattgccgatgatttcggtcgtgagcgtgagcgctacaagctgccctatggt
gctgtaatcagcgtcaaggaaggtgacaaggtcgatccgggcgcaatcgtcgccaagtgg
gacccgcacacccaccccatcgtgaccgaaatgaagggtaccgttaccttcgtcggcatg
gaggagggcatcaccatcaagcgtcagaccgacgaactgaccggtctgaccaacatcgaa
gtcctcgatccgaaagatcgtccggcggctggcaaggacatccgtccggccgtgaagctg
gtcgacgccaatggcaaggagctgctgctgccgggtaccgacgtacctgcccagtacttc
ctgccggcgaacgccctggtaggcgttgctgacggtgctcaagtgggcgtgggtgacgtt
atcgcccgtatcccgcaagagacttcgaagacccgcgacatcaccggtggtctgccgcgt
gttgccgacctgttcgaagcgcgtcgtccgaaagaaccgtcgatcctggcggaaatcagc
ggcacgatctccttcggtaaagagaccaagggcaagcgtcgcctggtcatcactccgacc
gacggttccgatccgtacgaagagctgattccgaagtggcgccacctgaacgtgttcgaa
ggcgaacaggtaaaccgcggcgaagtaatctcggacggcccgagcaacccgcacgacatc
ctgcgtctgctgggtgtcagcgctctggccaagtacatcgtcaacgagatccaggacgtg
tatcgcctgcagggcgtgaagatcaatgacaagcacatcgagaccatcctgcgtcagatg
ctgcgtaaggtcgagatcgccgagtcgggtgactccagcttcatcaagggtgaccagatg
gaactgacccaggtcctggaagagaacgaacgtctggcgaccgaagatcgcttcatcgcc
aagttcgagcgcgtcctgctgggtatcaccaaggcatcgctgtcgaccgagtcgttcatc
tccgcagcgtccttccaggaaaccacccgcgtcctcaccgaggcggcggttactggcaag
cgcgactacctgcgtggcctgaaggagaacgttgtagtgggtcgtctgatcccggccggt
accggcctggcctaccacagcgagcgcaagcgtcaacgcgaagccggcaagccggtccgt
gtaagcgcgagcgaagtggaagcggcgctgaccgaagcgctgaactccagcggcaattga
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integrated database retrieval system
