Pseudomonas solani: PSm6_29850
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Entry
PSm6_29850 CDS
T09213
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
psoa
Pseudomonas solani
Pathway
psoa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psoa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSm6_29850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psoa03019
]
PSm6_29850
Enzymes [BR:
psoa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PSm6_29850
Messenger RNA biogenesis [BR:
psoa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PSm6_29850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
BCD86578
LinkDB
All DBs
Position
3269348..3270664
Genome browser
AA seq
438 aa
AA seq
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MTFASLGLIDPLLRALDTLGYQTPSPVQAEAIPAVLKGRDLMAAAQTGTGKTAGFALPLL
QRLTLEGPQVAANSVRALVLVPTRELAEQVHESFRVYGQNLPLRTYAVYGGVSINPQMMK
LRKGIDVLVATPGRLLDLYRQNAVKFNQVQTLVLDEADRMLDLGFSRELDDVFSALPRRR
QTLLFSATFSDAIRQMARELLRDPLSIEVSPRNAAARSVKQWVTTVDKKRKSELFLHLLQ
ERRWGQVLVFVKTRKGVDELVDELQRTGVSADAIHGDKPQPSRLLALERFKAGEVQILVA
TDVAARGLDIDDLPLVVNFDLPIVAEDYVHRIGRTGRAGATGEAISLVCADEVQLLSAIE
VLIKQTLQRRDEPGFVPDHRVPQTDATGAILKKPKKPKKPKESQGKPGSARLGNWIDSEA
PKAKAVRKGPGFGKAKKG
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgaccttcgcttcccttggcctgatcgaccctctgctgcgcgcgctcgacacgctcggc
taccagaccccatcgccggtgcaggccgaggcgatccccgccgtgctcaagggccgcgac
ctgatggccgcggcgcagaccggcaccggcaagaccgccggtttcgccctgccgctgctg
cagcgcctgaccctggaaggcccgcaggtggccgccaactcggtgcgcgccctggtgctg
gtgcccacccgcgagctggccgagcaggttcacgagagcttccgcgtctacgggcagaac
ctgccgctgcgcacctatgcggtgtacggcggggtcagcatcaacccgcagatgatgaag
ctgcgcaagggcatcgacgtgctggtggccacccccggccgcctgctcgacctgtaccgg
cagaacgcggtcaagttcaaccaggtgcagacgctggtgctggacgaggccgaccgcatg
ctcgacctcggcttctcccgcgagctggacgatgtcttctccgcgctgccgcgccgtcgc
cagaccctgctgttctccgccaccttctccgacgccatccgccagatggcccgcgagctg
ctgcgcgacccgctgtccatcgaggtcagcccgcgcaacgccgccgcccgcagcgtcaag
cagtgggtgaccaccgtggacaagaagcgcaagtccgagctgttcctgcacctgctgcag
gagcgccgctggggccaggtgctggtcttcgtcaaaacccgcaagggcgtcgatgaactg
gtggacgagctgcaacgcaccggcgtgtccgccgacgccatccatggcgacaagccgcag
ccctcgcgcctgcttgccctggagcgcttcaaggctggcgaggtgcagatcctcgtcgcc
accgatgtcgccgcccgtggcctggacatcgacgacctgcccctggtggtcaacttcgac
ctgcccatcgtcgccgaggactacgtgcaccgcatcggccgcacgggccgtgccggcgcc
acgggggaggccatctccctggtctgcgccgatgaggtccagctgctctcggccatcgaa
gtgctgatcaagcagaccctgcagcgccgcgacgagcccggcttcgtccccgatcaccgg
gtgccgcagaccgacgccaccggcgccatcctgaaaaagcccaagaagccgaagaaaccc
aaggagtcccagggcaagccgggcagcgcgcgcctgggcaactggatcgacagcgaggca
ccgaaggccaaggccgtgcgcaagggcccggggttcggcaaggcgaaaaagggctga
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