Pseudomonas solani: PSm6_39260
Help
Entry
PSm6_39260 CDS
T09213
Name
(GenBank) hypothetical protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
psoa
Pseudomonas solani
Pathway
psoa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psoa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSm6_39260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psoa03019
]
PSm6_39260
03009 Ribosome biogenesis [BR:
psoa03009
]
PSm6_39260
Enzymes [BR:
psoa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PSm6_39260
Messenger RNA biogenesis [BR:
psoa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PSm6_39260
Ribosome biogenesis [BR:
psoa03009
]
Prokaryotic type
rRNA processing factors
PSm6_39260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
BCD87519
LinkDB
All DBs
Position
complement(4288901..4291984)
Genome browser
AA seq
1027 aa
AA seq
DB search
MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGAD
RHGFLPLKEISREYFKKSPEGRVNIKDVLNEGQEVIVQVEKEERGNKGAALTTFISLAGR
YLVLMPNNPRAGGISRRIEGEERNELREALNGLNAPADMGLIVRTAGLGRSSEELQWDLD
YLLQLWSAIKEASGERGAPFLIYQESNVIIRAIRDYLRQDIGEVLVDSVEAQEEALSFIR
QVMPQYQNKIKLYQDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSIDINS
ARATKGGDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVREA
LEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGQGIIRDVESLSLAILRL
IEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHFEVQ
RLRDDSPEVMHGQSSYEMTPSESEEQQPPAATRTLVRQEAAVKTVAPERPAPAPLAPPTA
AVAAAEPSLFKGLVKSLVGLFAGKEEAQPVATEQSASERPARSSDERRNGRQQNRRRDGS
REGRRDEERKPREERQPREAREPREPREPREGQENRRERGERPPREERQPREDRAPREAR
EPREERAPREPREERQPREERQPREERAPREAREPREPREPREGQENRRERGERPPREER
QPREERAPRPEQAAAEASEEELLNNEELLDDADGQEGAEGDRPRRRSRGQRRRSNRRERQ
REVEGEEGEEGSEEANVDGSVHAAVVVTAVAAEVIAEQVEGQASSEPTQVESAASEAPVA
APAAEAVAQEQEPVEVIETSAPAVIESEVSVVVVEPAAETVVEAPVETAQVAEVEAPAPV
VAPVVEAEPAPAPAAAPVSAGGRAPNDPREVRRRQQEAERLAREAAAAPVVEAPVVEEAA
PVVVEVAAEPVVEAQPEPVAEAVVEAQEVAEEPKVEVTEASTEAAEATVADEAKEEEEAK
DESKPTV
NT seq
3084 nt
NT seq
+upstream
nt +downstream
nt
atgctgattaacgcaactcagcccgaagagttgcgtgttgccctggtcgacggccaacgc
ctgtacgacctggatatcgagtcgggcgcccgtgaacagaaaaaggccaacatctacaaa
ggccgcatcacgcgcatcgagcccagcctcgaagccgcattcgtcgacttcggtgcagat
cgccacggcttcctgccgctgaaagaaatctcccgcgaatacttcaagaagtcccccgaa
gggcgcgtcaacatcaaggacgtgctcaacgaaggccaggaagtcatcgtccaggtcgag
aaagaagaacgtggcaacaagggcgcagccctgaccaccttcatcagcctcgccggccgt
tacctggtactgatgccgaacaacccgcgcgcgggcggcatctcccgtcgcatcgaaggc
gaagagcgcaacgaactgcgtgaggccctgaacggcctgaacgcaccggccgacatgggc
ctgatcgttcgcaccgccggcctgggccgctccagcgaagagctgcagtgggacctcgac
tacctgctgcaactctggagcgccatcaaggaagcttccggtgagcgcggcgcccccttc
ctgatctatcaggaaagcaacgtcatcattcgcgccatccgcgactacctgcgccaggac
atcggcgaagtactggtcgacagcgtcgaagcccaggaagaagccctgagcttcatccgc
caggtgatgccgcagtaccagaacaagatcaagctctaccaggacagcgttccgctgttc
aatcgcttccagatcgagagccagatcgaaaccgccttccagcgcgaagtgaaactgcct
tccggcggttccatcgtcatcgacccgaccgaagccctggtgtccatcgacatcaactcg
gcgcgtgcgaccaaaggcggcgacatcgaagaaaccgccctgcagaccaacctggaagcg
gccgaagagatcgctcgccagctgcgcctgcgtgatatcggcggtctgatcgtcatcgac
ttcatcgacatgaccccggccaagaaccagcgtgccgtggaagagaaggtccgcgaagcc
ctggaagccgaccgcgcccgcgtacaggtcggccgcatctcccgcttcggcctgctggaa
atgtcccgtcagcgcctgcgcccgtccctgggcgagagcagtggcatcgtctgcccgcgc
tgcaacggtcaaggcatcatccgcgacgtcgagtccctgtcgctggcgatcctgcgcctg
atcgaagaagaagccctgaaggaccgcaccgccgaagtccgtgcccaggtaccgattccg
gttgccgccttcctgctcaacgagaagcgcaacagcatcaccaagatcgagctgcgcacc
cgcgcccgcatcgtgatcctgccgaacgatcatctggagaccccgcacttcgaagtgcag
cgtctgcgcgatgacagcccggaagtcatgcacggccagtccagctacgagatgaccccg
tccgagagcgaagagcagcagccgcccgccgccacccgcaccctggttcgccaggaagcc
gccgtgaagaccgtggcccccgagcgccccgctccggccccgctggctccgccgaccgcc
gccgtcgccgctgccgaaccgagcctgttcaaaggcctggtgaagtcgctggtaggcctg
ttcgccggcaaggaagaagcccagcccgtcgctaccgagcaaagcgccagcgagcgtccg
gcccgcagcagtgacgagcgccgtaacggtcgccagcagaaccgccgccgtgacggcagc
cgtgaaggccgccgcgacgaagagcgcaagccgcgtgaagagcgtcaacctcgcgaagcc
cgtgagccgcgcgaaccgcgtgaacctcgcgaaggccaggaaaaccgccgcgaacgtggc
gagcgtccgccgcgcgaagagcgtcagcctcgtgaagaccgcgccccgcgcgaagcccgt
gaaccccgcgaagagcgcgcaccgcgcgagcctcgtgaggagcgccagccccgcgaagag
cgtcaaccccgtgaggagcgtgcaccgcgcgaagcccgtgagccacgcgagccgcgtgaa
cctcgcgaaggccaggaaaaccgccgcgaacgtggcgagcgtccgccgcgcgaagagcgc
cagccccgtgaagagcgcgccccgcgccccgagcaggctgccgccgaggccagcgaagaa
gaactgctgaacaacgaagagctgctggatgatgccgatggccaggaaggcgccgaaggc
gaccgcccccgccgccgctcccgtggccagcgtcgccgcagcaaccgccgtgagcgccag
cgtgaagtcgaaggcgaagaaggcgaggaaggcagcgaagaggccaatgtcgatggcagc
gtccacgccgccgttgtcgtgaccgccgtcgccgcagaagtcatcgccgagcaggtcgaa
ggccaagcgagcagcgagccgacccaggtcgaaagcgccgccagcgaagccccggtcgca
gcccctgccgccgaagccgtcgcccaggagcaggaaccggtcgaagtgatcgagaccagc
gcccctgccgtgatcgaaagcgaagtgtccgtcgtggtcgtcgagccggctgccgaaacc
gtggtcgaagcccccgtagagaccgctcaggtcgcagaagtggaagcaccggctccggtc
gtggcccctgttgtcgaagccgaaccggctcctgcccccgcggcagcaccggtaagcgcc
ggcggccgtgcaccgaacgatcctcgcgaagtccgtcgccgtcagcaggaagccgagcgt
cttgcacgcgaagctgccgcagcccccgtggtagaagccccggtggttgaggaagctgct
ccggtcgtggttgaagtcgccgccgagccggtggtggaagcccagcccgagcccgttgct
gaagctgtcgtggaagcccaggaagttgcggaagagcccaaggtcgaagtgaccgaggcc
agcaccgaagctgccgaagcaaccgtcgctgacgaagcgaaggaagaggaagaagccaag
gacgagtccaaaccgaccgtctaa
DBGET
integrated database retrieval system
