Pseudomonas solani: PSm6_58550
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Entry
PSm6_58550 CDS
T09213
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
psoa
Pseudomonas solani
Pathway
psoa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psoa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSm6_58550 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psoa03019
]
PSm6_58550 (deaD)
03009 Ribosome biogenesis [BR:
psoa03009
]
PSm6_58550 (deaD)
Enzymes [BR:
psoa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PSm6_58550 (deaD)
Messenger RNA biogenesis [BR:
psoa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PSm6_58550 (deaD)
Ribosome biogenesis [BR:
psoa03009
]
Prokaryotic type
rRNA helicases
PSm6_58550 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
HrpB7
HEM4
Motif
Other DBs
NCBI-ProteinID:
BCD89448
LinkDB
All DBs
Position
complement(6412890..6414572)
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AA seq
560 aa
AA seq
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MTQDIGGFAALGLHPNVLSAITAVGYEEPSPIQAQSIPVILAGHDMIGQAQTGTGKTAAF
ALPILSRIDPAKREPQALILAPTRELALQVATAFETYAKQMPGLSVVAVYGGAPMGPQLK
ALRQGAQVIVATPGRLCDHLRRDDQMLTTVQQLVLDEADEMLKLGFMDDLEVIFQALPES
RQSVLFSATLPPSIRSIAERHLKEPQHVKIAAKTQTVARIEQAHLMVHADQKVGAVLRLL
EVEEFDALIAFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVV
ATDVAARGIDVPRITHVLNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTNQKVAEVRLPNAQQVLDARIKKLTTGLAPLVADAEATHGELLDRLIADIGCSPRAL
AAALLRKATNGQALNLADVEREQPLVPSASQPRERRERDGERSSGERGEYRERRAPLPLT
EGRVRCRTALGTRDGIAAKNLLGAILNEGGLARDAIGRIQIRETFSLIELPEDGLDRLLG
KLKDTRVAGKSLKLRRYRED
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggatatcggcggattcgccgcgctcggacttcatcccaatgttctctccgcc
atcacggcagtgggctatgaagagccatcccccatccaggcccagtcgattccggtgatc
ctcgccggtcacgacatgattggccaggcccagaccggtaccggcaagaccgcagccttc
gcgctgcccatcctttcccgtatcgatccggccaaacgtgagccgcaggcgctgatcctg
gcaccgacccgcgagctcgcactgcaagtcgccaccgctttcgaaacctacgccaagcag
atgcccggcctgagtgtggtcgccgtatacggcggcgcgcccatgggcccgcagctcaag
gccctgcgccagggcgcccaggtcatcgtggccacccccggccgcctgtgcgaccacctg
cgccgtgacgaccagatgctcaccaccgtgcagcagttggtgctggacgaagcggacgaa
atgctcaagctcggcttcatggacgacctggaagtgatcttccaggccctgccggaaagc
cgtcagagcgtgctgttctccgccaccctgccgccgtcgatccgttcgatcgccgagcgt
cacctgaaagagccgcagcacgtcaagatcgccgccaagacccagaccgtggcccgcatc
gagcaggctcacctgatggtccacgccgaccagaaggtcggtgccgtgctgcgcctgctg
gaagtcgaggaattcgacgccctgatcgccttcgtgcgtaccaagcaggccaccctggac
ctggcctccgccctggaagccaaaggctacaaggctgccgcgctgaacggcgacatcgcc
cagaaccagcgtgagcgcgtgatcgaatccctcaaggacggtcgcctggacatcgtcgtc
gccaccgacgtcgctgcccgtggtatcgacgtaccgcgcatcacccacgtactgaacgtg
gacatgccgtacgaccccgagtcctacgtgcaccgtatcggccgtaccggtcgtgccggt
cgcgaaggccgtgccctgctgctggttaccccgcgcgagcgccgcatgctgcaggtgatc
gagcgcgtgaccaaccagaaggtcgccgaagtacgcctgcccaacgcccagcaagtgctg
gacgcacgcatcaagaagctgaccaccggcctcgcgcccctggtggccgatgcagaagcc
acccatggtgagctgctggatcgcctgatcgccgacatcggttgcagcccgcgtgccctg
gccgcagccctgctgcgcaaggccaccaatggccaggcgctgaacctcgccgacgtcgag
cgcgagcagccgctggtgccgagcgcctcgcagccgcgtgagcgtcgcgagcgtgatggc
gagcgttcctcgggggagcgtggcgagtaccgcgagcgtcgtgctccgctgccgctgacc
gaaggccgcgtgcgttgccgcaccgcgctggggacccgcgacggcatcgccgcgaagaac
ctgctcggcgccatcctcaatgagggtggtctggcacgtgacgccatcggtcgcatccag
atccgcgagaccttcagcctgatcgagctgccggaagacggcctggatcgcctgctgggc
aaactcaaggatacccgcgtcgcgggcaagtccctgaagctgcgccgctaccgcgaagac
tga
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