Pseudomonas solani PSBB082: ACSC9U_07070
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Entry
ACSC9U_07070 CDS
T11792
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
psob Pseudomonas solani PSBB082
Pathway
psob03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psob00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACSC9U_07070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psob03019
]
ACSC9U_07070
03009 Ribosome biogenesis [BR:
psob03009
]
ACSC9U_07070
Enzymes [BR:
psob01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ACSC9U_07070
Messenger RNA biogenesis [BR:
psob03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACSC9U_07070
Ribosome biogenesis [BR:
psob03009
]
Prokaryotic type
rRNA helicases
ACSC9U_07070
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_dimer
HEM4
Motif
Other DBs
NCBI-ProteinID:
XXL44721
LinkDB
All DBs
Position
1483644..1485326
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AA seq
560 aa
AA seq
DB search
MTQDIGGFAALGLHPNVLSAITAVGYEEPSPIQAQSIPVILAGHDMIGQAQTGTGKTAAF
ALPILSRIDPAKREPQALILAPTRELALQVATAFETYAKQMPGLSVVAVYGGAPMGPQLK
ALRQGAQVIVATPGRLCDHLRRDDQMLTTVQQLVLDEADEMLKLGFMDDLEVIFQALPES
RQSVLFSATLPPSIRSIAERHLKEPQHVKIAAKTQTVARIEQAHLMVHADQKVGAVLRLL
EVEEFDALIAFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVV
ATDVAARGIDVPRITHVLNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTNQKVAEVRLPNGQQVLDARIKKLTTSLTPLVADAEATHGELLDRLIADIGCSPRAL
AAALLRKATNGQALNLADVEREQPLVPSASQPRERRERDGERPSGERGEYRERRAPLPLT
EGRVRCRTALGTRDGIAAKNLLGAILNEGGLARDAIGRIQIRETFSLIELPEDGLDRLLG
KLKDTRVAGKSLKLRRYRED
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggatatcggcggattcgccgcgctcggacttcatcccaatgttctctccgcc
atcacggcagtgggctatgaagagccatcccccatccaggcccagtcgattccggtgatc
ctcgccggtcacgacatgattggccaggcccagaccggtaccggcaagaccgcagccttc
gcgctgcccatcctttcccgtatcgatccggccaaacgtgagccgcaggcgctgatcctg
gcaccgacccgcgagctcgcactgcaagtcgccaccgctttcgaaacctacgccaagcag
atgcccggcctgagtgtggtcgccgtatacggcggcgcgcccatgggcccgcagctcaag
gccctgcgccagggcgcccaggtcatcgtggccacccccggccgcctgtgcgaccacctg
cgccgtgacgaccagatgctcaccaccgtgcagcagctggtactggacgaagcggacgaa
atgctcaagctcggcttcatggacgacctggaagtgatcttccaggccctgccggaaagc
cgtcagagcgtgctgttctccgccaccctgccgccgtcgatccgttcgatcgccgagcgt
cacctgaaagagccgcagcacgtcaagatcgccgccaagacccagaccgtggcccgcatc
gagcaggctcacctgatggtccacgccgaccagaaggtcggtgccgtgctgcgcctgctg
gaagtcgaggaattcgacgccctgatcgccttcgtgcgtaccaagcaggccaccctggac
ctggcctccgccctggaagccaagggctacaaggctgccgcgctgaacggcgacatcgcc
cagaaccagcgtgagcgcgtgatcgagtccctcaaggacggtcgcctggacatcgtcgtc
gccaccgacgtcgctgcccgtggtatcgacgtaccgcgcatcacccacgtgctgaacgtg
gacatgccgtacgaccccgagtcctacgtgcaccgtatcggccgtaccggccgtgccggt
cgcgaaggccgtgccctgctgctggttaccccgcgcgagcgccgcatgctgcaggtgatc
gagcgtgtgaccaaccagaaggtcgccgaagtacgtctgcccaacggccagcaagtgctg
gatgcgcgcatcaagaagctgaccaccagcctcacgcccctggtggccgatgccgaagcc
acccatggtgagctgctggatcgcctgatcgccgacatcggttgcagcccgcgtgccctg
gccgcagccctgctgcgcaaggccaccaatggccaggcgctgaacctcgccgacgtcgag
cgcgagcagccgctggtgccgagcgcctcgcagccgcgtgagcgtcgcgagcgtgatggc
gagcgcccgtcgggtgagcgtggcgagtaccgcgagcgtcgtgctccgctgccgctgacc
gaaggccgcgtgcgttgccgcaccgcgctggggacccgcgacggcatcgccgcgaagaac
ctgctcggcgccatcctcaatgagggtggcctggcacgtgacgccatcggtcgcatccag
atccgcgagaccttcagcctgatcgagctgccggaagacggcctggatcgcctgctgggc
aagctcaaggacacccgcgtcgcgggcaagtccctgaagctgcgccgctaccgcgaagac
tga
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