Pseudomonas solani PSBB082: ACSC9U_26860
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Entry
ACSC9U_26860 CDS
T11792
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
psob Pseudomonas solani PSBB082
Pathway
psob03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psob00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACSC9U_26860 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psob03021
]
ACSC9U_26860 (rho)
03019 Messenger RNA biogenesis [BR:
psob03019
]
ACSC9U_26860 (rho)
Transcription machinery [BR:
psob03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
ACSC9U_26860 (rho)
Messenger RNA biogenesis [BR:
psob03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ACSC9U_26860 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
AAA_22
NACHT
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
XXL42760
LinkDB
All DBs
Position
5936169..5937428
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AA seq
419 aa
AA seq
DB search
MNLTELKQKPIADLLEMAEQMGLENMARSRKQDVIFALLKKHSKGGEEISGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIIGKIRPPKEGERYFALLKVDSIN
FDRPENAKNKILFENLTPLFPNERLKMEAGNGSTEDLTGRVIDLCAPIGKGQRGLIVAPP
KAGKTIMLQNIAANITRNNPECHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPTRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMELPLDRRIAEKRVFPAINI
NKSGTRREELLTADDELQRMWILRKLLHPMDEIAAIEFLLDKLKDTKTNDEFFMSMKRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatctgaccgaactcaagcaaaagccgattgccgatctgctggaaatggccgaacag
atgggcctcgagaacatggcccgttcgcgcaagcaggacgtgatcttcgccctgctgaaa
aagcactcgaaaggcggcgaggaaatctccggtgacggcgtgctggagattctccaggac
ggttttggcttcctgcgctccgcagactcttcctacctggccggcccggacgacatctac
gtctcgcccagccagatccgccgcttcaacctgcgcaccggcgacaccatcatcggcaag
atccgcccgccgaaagaaggcgagcgttacttcgccctgctcaaggtggactcgatcaac
ttcgatcgtccggaaaacgccaagaacaagatcctgttcgagaacctgacgcccctgttc
cccaacgagcgcctgaagatggaggccggcaacggttccaccgaagacctcaccggccgc
gtgatcgacctctgcgcgccgatcggcaagggccagcgcggcctgatcgtcgccccgccg
aaagcgggcaagaccatcatgctgcagaacatcgcggccaacatcacccgcaacaacccc
gagtgccacctgatcgtcctgctgatcgacgagcgcccggaagaagtgaccgagatgcag
cgcaccgtgcgcggcgaagtggtcgcctccaccttcgatgaaccgccgacccgccacgtg
caggttgccgagatggtgatcgaaaaggccaagcgcctggtcgagcacaagaaggacgtg
gtcatcctgctggactccatcacccgcctggcgcgtgcctacaacaccgtgatcccgagc
tctggcaaggtgctgaccggtggtgtcgacgcccatgccctggagaagcccaagcgcttc
ttcggtgccgcccgtaacatcgaggaaggcggttcgctgaccatcatcgccaccgcgctg
gtcgagaccggctcgaagatggacgaggtgatctacgaggaattcaagggcaccggcaac
atggagctgccgctggaccgccgcatcgccgagaagcgcgtgttccccgccatcaacatc
aacaagtccggtacccgccgcgaagagctgctgactgccgacgacgagctgcagcgcatg
tggatcctgcgcaagctgctgcacccgatggacgagatcgccgccatcgagttcctgctc
gacaagctcaaggacaccaagaccaacgacgaattcttcatgtccatgaagcgcaagtaa
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