Porphyromonas somerae: CE91St14_04240
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Entry
CE91St14_04240 CDS
T08199
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
psoe
Porphyromonas somerae
Pathway
psoe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psoe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CE91St14_04240 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psoe03021
]
CE91St14_04240 (rho)
03019 Messenger RNA biogenesis [BR:
psoe03019
]
CE91St14_04240 (rho)
Transcription machinery [BR:
psoe03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CE91St14_04240 (rho)
Messenger RNA biogenesis [BR:
psoe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CE91St14_04240 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
AAA_25
Rho_N
NACHT
AAA_22
Mor
OB_RNB
CSD
Motif
Other DBs
NCBI-ProteinID:
BDE81396
LinkDB
All DBs
Position
505670..507631
Genome browser
AA seq
653 aa
AA seq
DB search
MAQSYTLFELNALSDDELNKAAEELGTKGRLPKISRQELVYQILDEQANQSAQQMAGGRK
KATTKAKATKSTPKKATAKKATPEKKEEPDKAEAIAKAKAATAINRRRTANKDEEADTKE
GAKENKPTRRRGRPTKAEQEAAKKEETAKKSEAQPKKTDNSDDKAKAPKEEAKPAAKHEP
QVFVNKNASNSVLTDMMGMIAPNQPKKEEKKGAPAKEEETTQPKQASQQKATQTDNNQQQ
PKKPQGNPAQNNNNHQGNNNQNRQPQAEPQPAKPTYDFKDTLHSTGVLEVLPDGYGFIRS
SDYNYLSSPDDVYVSQSQIKSYGLKTGDVIEAIITPPRDKDKYFPMKSLVRLNGCDPKQV
RDRVPFDHLTPLFPTEKFKLEAPTASKVYDKVGVRIVDLFSPIGKGQRGLIVAQPKTGKT
MLLKDIANAIAHNHPEVYMIVLLIDERPEEVTDMARNVDAEVIASTFDEPVEQHVKIADI
VLQKAKRLVECGHDVVILLDSITRLARAYNTVQPASGKVLSGGVDANALQKPKRFFGAAR
NIEGGGSLTILATALTETGSKMDDVIFEEFKGTGNMELQLDRKLSNKRIFPAVDLQSSST
RRDDLLQDQETLNRMWVLRRHINDMTSLEAMELIKSRIENTVDNIEFLASMNS
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atggcacaaagttatacactctttgagctcaatgctctaagtgatgatgaactcaataaa
gccgctgaggagctagggactaagggacgtttacctaagatttctcgacaggaactagtc
tatcaaatcctagacgaacaggccaatcagtcggcacagcaaatggctggcgggcgaaag
aaagcaaccacaaaggcaaaggctaccaagtcaacccctaagaaagctactgcaaaaaag
gcaactccagaaaagaaggaagagcctgataaggcggaggctattgcaaaggccaaggca
gcaactgccattaatcgtcgtagaacagccaacaaggacgaggaagctgataccaaggag
ggggctaaggaaaataagcctactcgtcgccgtggtagacctacgaaggcagagcaagag
gcggctaagaaggaggagactgctaagaagtctgaggcgcaacctaagaagactgacaac
tctgatgacaaggcaaaggctcctaaggaggaggctaagcccgctgcaaagcatgagcct
caggtgtttgtcaataagaatgccagcaattcggtactcaccgatatgatggggatgatt
gcccctaatcaacctaaaaaggaggagaagaagggtgctccagctaaggaagaggagacg
actcagcctaagcaagcatcacagcaaaaagctacccagacagataataatcagcaacag
ccaaagaagccacagggcaacccagctcagaataataataatcatcagggcaataacaac
cagaatcgtcagccacaggcagagccacaaccagcgaagcctacctacgacttcaaggat
acccttcatagcactggtgtactagaggtattgcccgatggctacggttttattcgctcc
agcgactacaactatctatcctcccccgatgatgtctatgtgtctcagtcgcaaatcaag
tcgtatgggcttaagaccggcgatgtcattgaggcgatcattactccgccgagggataag
gataagtatttcccaatgaagagcttggtgcgtcttaatggttgcgaccctaagcaggtg
cgtgaccgagtaccttttgaccatctaacccctctcttccctactgagaagttcaagttg
gaagcacctactgcctccaaggtttatgataaggttggcgtgaggattgtagatctcttc
tcccctattggtaaggggcagcgtggtttgatcgtagcacagcctaagactggtaagaca
atgctcctaaaggacattgccaatgcgattgcccataaccaccccgaggtctatatgatt
gtcctattgattgatgagcgacctgaggaggtgacagatatggcacgcaacgtcgatgcc
gaggtgattgcttcgacctttgatgagccagtagagcagcatgtgaagattgccgatatt
gtcctacagaaggccaagcgattggtagagtgcggtcacgatgtggtcatcttgctcgac
tctattacccgtcttgctcgtgcctacaataccgttcagccagcttccggaaaggtacta
tcgggtggtgttgatgccaatgcgttgcagaagcctaagcgtttcttcggtgcagctcgt
aatatcgagggaggcggaagtctcaccattcttgctaccgcacttactgagactggctcc
aagatggatgatgtgatcttcgaggagttcaagggaacaggtaatatggagctacagctc
gatcgtaagctctccaataagcgtattttcccagcagtggatctgcagagctctagcact
cgtcgagacgacctacttcaggatcaagaaaccctcaatcgtatgtgggtgcttcgccgt
catatcaatgatatgacctctctcgaagccatggagctcatcaagtcacgtatagagaat
acggtagataatatcgagttcttagcctccatgaatagctaa
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