Porphyromonas somerae: CE91St14_20000
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Entry
CE91St14_20000 CDS
T08199
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
psoe
Porphyromonas somerae
Pathway
psoe03410
Base excision repair
psoe03430
Mismatch repair
psoe03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psoe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CE91St14_20000
03430 Mismatch repair
CE91St14_20000
03440 Homologous recombination
CE91St14_20000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psoe03400
]
CE91St14_20000
DNA repair and recombination proteins [BR:
psoe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
CE91St14_20000
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
CE91St14_20000
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CE91St14_20000
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Toprim
Motif
Other DBs
NCBI-ProteinID:
BDE82972
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Position
complement(2443265..2445022)
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AA seq
585 aa
AA seq
DB search
MDLVWKYEPLGSEEQEIAEALCRDAKLLPSTVEVVMKRGIRSSEELSSYLKPSLRELHDP
FLMPDMTKAVARLNKAIGNKEKIIVYGDYDVDGITAVTLVYKYLRYITTAIEYYIPDRYE
EGSGISRQAIEYAHEAGVKLMIVLDCGIKANDMVAYAKSLGIDIIICDHHVPDDALPEAV
ANLNPKLKGSPYPFKELSGCGVGYKLMQAFGLSNATDRRLLDNMLDLVAVSIAADLVPLV
GENRILAYYGLKKLNRRPSLGLKSIINVSGLQSKQLDMSDIIFKIGPRINASGRVQSGRE
SVDLLLARDAKEAREMSYHIDEYNNQRRLIDHSITQEANDIVESFTDMEDRKIIIVYDPS
WHNGVIGIVASRLSERYNRPTIVLTDTQDDRVNGSARSVMGYDIHTLLEANKDILDNFGG
HPFAAGLTIQKKYLHQFIQNATHQADEELTMEDLQPRHVIDYPLELSDITPKLRRQLRSL
APYGPGNEKPLFMTRGVVSVTPPRLMGYKKSHLRLMISMPNEMPIYQAVAYNQAELLPLI
ASGRPFDILYSIEEFQRKGRFAVQLYIVDIHIDGREKCDETPAIH
NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
atggatttagtttggaaatatgagccattggggagcgaggagcaggagatagctgaggcg
ttgtgccgagatgctaagcttctgccttcgactgtggaggtggtgatgaagcgaggcatt
cgcagtagtgaagagctctctagctaccttaagccatcgcttagagagctccatgatccc
ttcctgatgcctgatatgaccaaggctgttgcccgcctaaataaggcgatcggcaataaa
gagaagatcatcgtttatggcgattatgatgtggatggcatcaccgccgttaccctagtt
tataagtatctgcggtatattaccacggcgatagagtattatattcccgatagatacgag
gaggggagtggcatctcacggcaggcgattgagtatgctcatgaagcgggtgtgaagctg
atgattgtgctcgattgtggtatcaaggccaatgatatggtggcgtatgccaagagccta
ggcattgatatcattatctgcgaccaccatgtcccagatgacgcccttcccgaggcagtt
gccaacctcaatcctaagctcaaaggctccccctatcccttcaaagagctatctggctgt
ggggtagggtacaagctgatgcaggccttcggattgagcaatgccaccgataggcgcctt
ctggataatatgctcgaccttgtggcggtaagtattgctgccgacttggtgcccctagtg
ggggaaaatcggatcctcgcctattatggtctgaaaaagctcaatcgccgaccctctctc
ggccttaagagcattatcaatgtgagtggcttgcagagcaaacagctcgatatgagcgat
atcatcttcaagattggtcctcgcatcaatgcctcagggagagtgcagagtggtcgagag
tcagtggacctgctactggcacgcgatgccaaggaggcacgcgagatgagctatcatatt
gatgagtacaataaccagcgtcggctaatcgatcactccatcacacaggaagccaatgat
atcgtggagagcttcacagatatggaggatcgcaagatcatcattgtctacgatccttcg
tggcacaatggcgtgataggaattgtggcttcgcgactttcggagcggtacaatcgtccc
accatcgtcctcaccgatacccaagacgatcgcgtcaatggttccgcccgaagtgtgatg
ggctacgatatccacacccttttagaagccaataaagatatcctcgataacttcggtggt
cacccctttgcagcagggctcacgatccaaaagaagtacctccaccaatttatccaaaat
gctactcatcaagccgatgaagagctcacgatggaagatctccagccccgccatgtcatc
gattatccgctagagctatccgatattacccccaagctacgtaggcaattgaggagcctt
gccccttatgggccgggcaatgaaaagcctctcttcatgactcgtggtgtggtgagcgtt
acccctcctagattgatgggctacaaaaagagccacctcaggctgatgatctccatgccc
aatgagatgcctatctaccaagccgttgcctacaatcaggcagagttgcttcccttgatt
gctagcggccggccctttgatatcctctattccattgaggaatttcagcggaagggtcgc
ttcgctgtgcagctctatatcgtcgatatccatatagatggtagagagaagtgcgatgaa
accccagctatccactga
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