Porphyromonas somerae: CE91St14_21300
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Entry
CE91St14_21300 CDS
T08199
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
psoe
Porphyromonas somerae
Pathway
psoe03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psoe00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CE91St14_21300 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psoe03021
]
CE91St14_21300 (rpoC)
03400 DNA repair and recombination proteins [BR:
psoe03400
]
CE91St14_21300 (rpoC)
Enzymes [BR:
psoe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CE91St14_21300 (rpoC)
Transcription machinery [BR:
psoe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CE91St14_21300 (rpoC)
DNA repair and recombination proteins [BR:
psoe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CE91St14_21300 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Biotin_lipoyl_2
Biotin_lipoyl
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
BDE83102
LinkDB
All DBs
Position
2606451..2610740
Genome browser
AA seq
1429 aa
AA seq
DB search
MAFIRDTKIKSNFNQIRIGIASPEEIFENSHGEVTKPETINYRTYKPERDGLFCERIFGP
VKDYECHCGKYKRVRYKGVVCDRCQVEVTEKKVRRERMGHIKLEVPVVHIWFFRSVPNKI
AYLLGIPAKKLEKIIYYESYVVVQPGPYEDLEVGDLLTEEEYLDRMASLPQENKELSDED
HNKFFAEIGAVAVEALLSRVNLDELSYNLRARAAKETSQQRKKEALKRLQVVESFRASHG
YTRPEWMVMRVIPVIPPDLRPLVPLDGGRFATSDLNELYRRVIIRNNRLRRLIETRAPQV
ILRNEKRMLQEAVDSLFDNSGKSGAVKSDSNRPLKSLTDSLKGKQGRFRQNLLGKRVDYS
ARSVIVVGPSLKMHECGLPQDMAAELYKPFVIRKLIERGIVKTVKSARRIVDRREPVIWD
ILENVVKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIRLHPLACTAFNADFDGDQMAVHL
PLSNDAILEAQFLMLASHNILNPANGTPITVPSQDMVLGLYYITKLRDGVKGEGYKFYSP
EEARIAYNNGKIDIHAKIQVVVDDLDEDRKPFKHMIETSYGRLLFNSKVPDEIGYINDLI
GKKSLRTLIGEVIKYCGISRTSQFLDDIKDLGYYMAFKGGLSFNLSDVIIPEQKEELIQE
GYDEVAEIMDDFNMGNITNNERYNQIIDVWTNVNNNLSAILMKELKEDDQGFNSIFMMMD
SGARGSANQIQQLSGIRGLMAKPQRSGEGAQTMENPILSNFKEGLSVLEYFISTHGARKG
LSDTALKTADAGYLTRRLVDVSQDVIITEEDCGTLRGIVRREIKEGSSVVASLYERILGR
VSVHDVVHPISGELIVAAGEEIDEAKASKIQESPITEVEIRSVLTCEAKQGVCAKCYGRN
LAHNHLVHKGEVVGVVAAQSIGEPGTQLTLRTFHAGGVASTDTIERLIKAKYDGILEIEE
LRTVDAKDEEGKPFKVVVGRQAEMHIVDPHTHMTLINENIPYGAKLFIEPGAEVKADDII
FETDPFNAVIVAEVSGKLQYEDVVEGSTFRVQSDTNIAAGHTDRIIIESKDKKLSPAMSI
IGKDGEVIKTYNLPVGAHLNNQQGQKVKAGDVLVKIPRTVVKSGDITGGLPRVTELFEAR
NPSNPAVVAEIDGEITLGKVRRGNREVIVTSSTGEERKYLVSQTRQLLVQENDFVRAGEP
LSDGAVSPTDILEILGPNAVQNYIVNGVQDVYRKQGVSINDKHFEVIVRQMMRKVEIIDA
GDTKFLEQQLVDKIDVQDENNRLWGKKVITDPGESTTYFEGQIITARHLREENSLLRRND
KKVMEVRDALPATTKQVLQGITRAALQTKSFMSAASFQETPKVLNNAAIEGKIDKLEALK
ENVICGHLIPAGTGLREYEKIVVASKADIESQRLLETTKGPKSGVVIPD
NT seq
4290 nt
NT seq
+upstream
nt +downstream
nt
atggctttcataagagatacaaagataaagtccaacttcaatcaaatccgtatcggtatc
gcctctcctgaggagatattcgagaattcacacggtgaagttactaagcccgagaccatc
aactatcgtacttacaaaccagagcgggatggtctattttgcgagcgtattttcggaccg
gttaaggattacgaatgtcactgtggtaagtacaagcgtgtccgttacaagggtgtagtt
tgtgaccgttgccaggtagaggtaacggagaagaaggtgcgccgtgagcgaatggggcat
atcaagctggaggtgccagtagtacacatctggtttttccgctccgtgcccaataagatc
gcttatcttttaggaatcccagcaaagaaactggagaagattatatactacgagagctat
gtagtggttcagccaggtccttacgaagacttggaggtgggcgacctactaactgaggag
gagtacctagaccgtatggctagcctccctcaggagaataaagagttgtctgatgaggac
cacaataagtttttcgcagaaattggtgcggtggctgtagaggcactgctctctagagtt
aatctagatgagctctcgtacaaccttcgtgctagagccgctaaggagacttctcagcag
cgcaaaaaggaggctcttaagcgcctgcaggtggtagagagtttccgtgctagccacggc
tacactcgccctgagtggatggtgatgagggtgatccctgttatcccaccagatctacgt
ccgttggtgccattggatggtggtcgttttgctacctccgacctcaatgagctctatcgt
agggtgattattcgtaacaatcgtctgcgtcgtctgattgagacaagggcacctcaggtg
atcctccgcaatgagaagcgtatgcttcaggaggcggtagatagcctattcgacaattct
ggtaagtcgggtgcagtgaagagcgactccaatcgtccgctcaagtcacttaccgatagc
cttaagggtaagcagggtcgtttccgtcagaacctacttggtaagcgtgtcgactactct
gctcgttcggtgattgtggtgggtcctagtctcaaaatgcatgagtgtggattgccacaa
gatatggcggcagagctctacaagccatttgtgatccgcaagctgattgagcgcggtatc
gtgaagaccgtgaagagtgcgcgccgtattgtagaccgtcgtgagccagtgatctgggat
atcttggagaatgtcgtgaaggggcacccagtgctactcaaccgtgctcctacacttcac
cgtctaggtattcaggctttccagccaaagctaatcgagggtaaagccattcgtctgcac
ccactagcttgtaccgcatttaacgccgacttcgatggtgaccagatggccgttcacttg
ccactctctaatgatgcaatcctagaggcacagttcttgatgcttgcctcacacaatata
ttgaaccctgccaatggtactcctattaccgtgccttcgcaggatatggtattgggacta
tattatatcaccaagcttcgtgacggagtaaagggtgagggctataagttctactctcca
gaggaggcacgaattgcctacaataatggcaaaatcgacatccatgccaagattcaagtg
gtggtggatgaccttgatgaggaccgcaagccatttaagcatatgattgagacctcgtat
ggtcgtctgctcttcaactctaaggtgcctgatgagattgggtatatcaatgacctgatt
ggcaagaagagtcttcgtacgctgatcggtgaggtgatcaagtattgtggtatctcacgt
acttcacaattcctcgatgatatcaaagacctcgggtactatatggcctttaagggtggt
ctttcattcaacctttctgatgtaatcattcctgagcaaaaggaagagctcatccaagag
ggttatgacgaggtggccgagattatggacgacttcaatatgggtaatattaccaataat
gagcgttataaccagatcatcgacgtttggaccaatgtgaataacaacctttctgctatc
ctgatgaaggagttgaaggaggacgaccaaggcttcaactctatctttatgatgatggac
tcaggagcccgtggttcggccaaccagattcagcagctgagtggtattcgtggtctgatg
gctaagccacagagaagtggtgagggtgctcagacgatggagaaccctatcctctccaac
tttaaggagggactttcagtgctagagtactttatctctacccacggtgctcgtaagggt
ctttcggatacggcacttaagacggccgatgctggatacctcactcgtcgtctcgtcgac
gtttctcaagatgtgattatcaccgaagaggattgcggtaccctacgtggtattgtgcgt
cgtgagatcaaggaaggttctagtgtagtagcatcgctttatgagcgtatccttggtcgt
gtgtcagtacacgatgtagtacacccaatttcaggcgagctgattgtcgctgctggtgaa
gagattgatgaggccaaggcttctaagatacaagagtcgccaatcactgaggtggagatc
cgctctgtgctcacttgtgaagcaaagcaaggagtttgtgctaagtgctatggacgcaac
ttggcccacaaccacttggtacacaagggtgaggtagttggtgtggtagctgctcagtct
atcggtgagccaggtacacagcttacgcttcgtaccttccacgccggtggtgtggcaagt
accgatactattgagcgactcatcaaggctaagtacgatggtatccttgagatcgaggag
cttcgtacggtagatgccaaggatgaagagggtaagccattcaaagtggtggtcggacgt
caggccgagatgcatattgtagaccctcacactcatatgacgcttatcaatgagaatata
ccttatggtgcaaaactctttatagagccaggtgccgaggtgaaggcagatgatatcatc
tttgagactgacccattcaacgcggtgattgttgctgaggtgagcggtaagctacagtat
gaggatgtggtagagggtagtaccttccgtgtacagtcggataccaatatcgctgctggc
cataccgataggatcatcattgagagtaaggataagaagctatcgccagcaatgtcaatt
attggcaaggatggcgaggtgatcaagacttataacctcccagtgggtgcccacctcaat
aaccaacagggtcagaaggtaaaggccggtgatgtactagttaagatcccacgtaccgta
gtgaagtcgggcgatatcacaggtggtctaccacgtgtaacggagctcttcgaggcacgt
aacccatctaacccagctgtggttgcagagatcgatggtgagatcacacttggaaaggtg
cgtcgtggtaatcgcgaagtgattgtgacgagtagtactggcgaggagcgcaagtatcta
gtgagccaaacccgccaattgctggtgcaggagaatgacttcgtacgtgctggcgaacca
ctatcagatggagctgtttctccaaccgatatcctagagatattaggaccaaatgcggtg
caaaactacatcgtgaatggagtacaagacgtctaccgtaagcaaggtgtgtcgatcaac
gacaagcactttgaggtgattgtacgtcagatgatgcgtaaggtagagatcattgatgct
ggagataccaagttcctcgagcagcagttggtggataagatcgacgttcaggacgagaat
aatcgtctctggggtaagaaggtgatcaccgatccaggcgagtctaccacttacttcgaa
ggtcagatcatcaccgctcgtcacctacgtgaggagaatagcttgctgcgccgtaacgat
aagaaggtgatggaggtacgcgatgcccttcctgcaactaccaagcaggtacttcagggt
attactcgtgctgctcttcagaccaagagctttatgtctgccgcctccttccaggagaca
cctaaggtgctgaataacgcggctatcgagggtaagatagataagcttgaggctctaaag
gagaacgtaatctgcggtcacctgatccctgcaggtactgggttgcgtgagtacgagaag
atcgtggtagcttccaaagctgatatcgaatcccagcgcctactagagaccaccaaaggt
cctaagtcaggagttgtgatcccagactaa
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integrated database retrieval system
