Propioniciclava soli: PCC79_03275
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Entry
PCC79_03275 CDS
T10107
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
psoi Propioniciclava soli
Pathway
psoi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psoi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PCC79_03275 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psoi03400
]
PCC79_03275 (mfd)
Enzymes [BR:
psoi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PCC79_03275 (mfd)
DNA repair and recombination proteins [BR:
psoi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PCC79_03275 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
Cas3-like_C_2
ResIII
RecG_dom3_C
AAA_22
Gas_vesicle_C
Motif
Other DBs
NCBI-ProteinID:
WZW99235
LinkDB
All DBs
Position
733240..736725
Genome browser
AA seq
1161 aa
AA seq
DB search
MDLSELIELVASEPTLADLVDVARAGAEPTGDVTCPEPVRPLVAAALARDARRPLLVVTS
TYREAEAATDALRSLLGPDDVAYFPAWETLPHERLSPRSDTVGRRLAVLRRFAGTSELPP
PRVTVAPVRAVLQPQVAGLGKLRPVRLAVGEDHDVDAVAQALVDAAYVRVDLVERRGEFA
VRGGIVDVFPPTEEHPLRVDFFGDTVEEIHPFAVADQRSDDEQRREVVASPCRELLLDDA
VRARAGEHAANLAIPQQLRELFERISEGHAVDGMEALAPALVDRMELLVDVVDPATLVLV
SDPEKVRTRAAELHETSQEFLAASWSAAAAGGKAPIDLGASAYRQLGDVRSDALAGGLGW
WTLSAFADDPDSSRVPGTVNEPFRGDVEAAVDAIAAAAASGQRVVLVADTPGRASRMNDI
LAEHDLAGKVEVIEAELGRGFTLEALNLWVVTSADLSGQKGVEKAARQMPARRKNTIDPL
ELTAGDHVVHDAHGVGRYVEMVQRTIGGATREYLVIEYAASKRGQPADRLFVPMDALDQI
TRYVGGEAPTLDRMGGADWNKRKSRARKAVRQIAAELIKLYAARQASEGYAFGPDSPWQR
ELEDTFSYVETPDQMAAITEVKGDMERVVPMDRLVCGDVGYGKTEIAVRAAFKAVMDGKQ
VAILVPTTLLVQQHHATFADRYAGFPVTLGALSRFQTAAESKKVVDGLADGSVDVVVGTH
RLLSDQVVFKDLGLVIVDEEQRFGVDHKEALKKMRLNVDVLSMSATPIPRTLEMAVTGIR
EMSVIATPPEERHPVLTFAGPWEEGQVRAAIRRELAREGQVFYIHNRVQTIEKTAARIRE
LVPEARVAVAHGQMNENALEQVMVNFWEREADVLVCTTIVEAGLDISTANTLLIERADLL
GLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHDRLATMAAHTDLGAGMAIALRDLE
IRGAGNLLGEEQSGHIADVGFDLYLRLVGEAVAEYRGEDVEPEPEMKIELPVEAHLPGEY
VESERLRLEMYKRLAAVRSEAELDAVREELLDRYGPLPKPVENLLAVARFRLLCRAAGLS
EVLSAGTMVRFSPVTLPESRDMRRQRLYPGSRVNRQTEQLFLPRPRTAPVAGQPLVDADL
IAWATEAVTALLAPEVAASRA
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
gtggatctttccgagctgatcgagctcgtcgcgtccgaacccaccctggctgacctggtg
gacgtcgcgcgcgcgggggccgagccgacgggcgacgtgacgtgtccggaaccggtgcgc
cccctggtggcggcggcgttggcgcgggacgcgcggcgtccgctgctggtggtcacgtcg
acgtaccgcgaggctgaggcggccacggatgcgctccgttcgttgctcgggccagacgac
gtcgcctacttccccgcctgggagacgctgccccacgagcgcctctcgccgcgctccgac
accgtgggccggcgcctggccgtcctgcgccggttcgctggcacgtcggagctgccgccg
ccgcgcgtgaccgtcgcgcccgtccgggcggtgctgcagccccaggtcgcggggctgggc
aaactgcgtccggttcgcctggccgtgggtgaggaccacgacgtggacgccgtcgcgcag
gccctcgtggacgccgcctatgtgcgcgtcgacctcgtcgaacgccggggcgagttcgcc
gtgcgtggcggcatcgtcgacgtgtttccccccaccgaggagcacccgctgcgggtcgac
ttcttcggcgacaccgtcgaggagatccacccgttcgccgtggccgaccagcgcagtgac
gacgagcagcgccgcgaggtcgtcgcctcgccgtgccgcgagctgctgctggacgacgcc
gtccgcgcccgcgcgggcgagcatgccgccaacctcgccattccgcagcagttgcgcgag
ctgttcgagcgcatcagcgaggggcacgccgtcgacggcatggaggcactggcccccgcg
ctcgtcgaccgcatggagctgctcgtcgatgtggtcgaccccgccaccctcgtgctggtc
agcgaccccgagaaggtgcgcacccgcgcggcagaactgcacgagacgtcgcaggaattc
ctcgcggcgagctggtcggcggccgcggccggcggcaaggcgcccatcgacctcggggcc
tcggcctaccgacagctcggcgacgtccggtcggacgccctggctggcggcctgggctgg
tggaccctgtcggcgttcgccgacgacccggacagcagccgcgtccccggcacggtcaac
gagccgttccgcggtgacgtggaggcggcggtggacgccatcgccgcggcggcggcgtcc
gggcagcgggtggtgctggtggcggacaccccggggcgcgcgtcccggatgaacgacatc
ctcgctgagcacgacctcgcggggaaggtggaggtgatcgaggccgaactcggccgcggc
ttcaccctcgaggcgctgaacctgtgggtggtgacgagcgccgacctgtcggggcagaag
ggcgtggagaaggccgcccggcagatgccggcgcggcgcaagaacacgatcgacccgctc
gagctcacggcgggcgaccacgtcgtccacgacgcccacggggtggggcgctacgtcgag
atggtgcagcgcacgatcggcggggccacgcgggagtacctggtcatcgagtacgccgcc
agcaagcggggccagccggccgaccggctgttcgtgcccatggacgccctcgaccagatc
acccgctacgtcggtggcgaggccccgacgctcgaccgcatgggcggggcggactggaac
aagcgcaagagccgcgcccgcaaggccgtccggcagatcgctgcggaactcatcaagctg
tacgccgcgcggcaggcgtccgagggctacgcgttcggccccgacagcccgtggcagcgc
gagctggaggacacgttctcctacgtcgagacgcccgaccagatggcggccatcaccgag
gtgaagggcgacatggagcgcgtcgtgcccatggaccgcctggtgtgcggcgacgtcggc
tacggcaagaccgagatcgccgtccgcgccgcgttcaaggccgtgatggacggcaagcag
gtcgcgatcctcgtgcccacgaccctgctggtgcagcagcaccacgccaccttcgccgac
cggtacgccggcttccccgtcaccctcggcgccctgagccggttccagaccgccgcggag
tccaagaaggtggtggacggcctggccgacggctcggtcgacgtcgtcgtgggcacgcac
cggctgctgtccgaccaggtcgtgttcaaggatctcggcctggtgatcgtcgacgaggag
cagcgcttcggcgtcgaccacaaggaggcgctgaagaagatgcgcctcaacgtcgacgtg
ctgtcgatgtcggccacccccattccccgcaccctggagatggcggtcacgggcatccgg
gagatgagcgtcatcgccacgccgccggaggagcgtcacccggtgctgaccttcgccggc
ccgtgggaggaggggcaggtgcgcgcggcgatccggcgcgagctggcccgcgaggggcag
gtgttctacatccacaaccgcgtgcagaccatcgagaagacggccgcccgcatccgcgag
ctggtgcccgaggcgcgcgtggcggtggcccacggccagatgaacgagaacgccctcgag
caggtgatggtcaacttctgggagcgcgaggccgacgtcctggtctgcaccacgatcgtg
gaggcaggcctggacatctcgacggccaacaccctgctcatcgagcgcgccgacctgctc
ggcctctcgcagttgcaccagctgcgcggacgcgtcggccgcggccgggagcgggggtac
gcctacttcctctacccgccggagaagccgctcaccgagacggcccacgaccggctggcc
acgatggccgcccacaccgacctgggggcgggcatggcgatcgccctgcgtgacctcgag
atccgcggtgccggcaacctgctgggggaggagcagtcgggccacatcgccgacgtcggc
ttcgacctgtacctgcgcctggtgggggaggcggtcgccgagtaccgcggcgaggacgtc
gaacccgagcccgagatgaagatcgagctgcccgtcgaggcccacctgccgggtgagtac
gtcgagtcggagcggttgcgcctcgagatgtacaagcgcctcgccgcggtgcgctcggag
gccgagctggacgccgtccgtgaggaactgctcgaccggtacggccccctccccaaaccc
gtcgagaacctgctggccgtcgcgcggttccggctgctgtgccgggcggcggggctgagc
gaggtgctgagcgccggcacgatggtgcggttctccccggtcacgctgccggagagccgg
gacatgcgtcggcagcggctctacccgggctcgcgcgtcaaccggcagaccgagcagctg
ttcctgccgcgtccgcggacggcgcccgtggccggtcagccgctggtcgatgccgacctg
atcgcctgggccaccgaggccgtcacggcgctgctcgcccccgaggtcgcggccagccgc
gcgtag
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