Propioniciclava soli: PCC79_04535
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Entry
PCC79_04535 CDS
T10107
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
psoi Propioniciclava soli
Pathway
psoi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psoi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PCC79_04535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psoi03021
]
PCC79_04535
03400 DNA repair and recombination proteins [BR:
psoi03400
]
PCC79_04535
Enzymes [BR:
psoi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PCC79_04535
Transcription machinery [BR:
psoi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PCC79_04535
DNA repair and recombination proteins [BR:
psoi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PCC79_04535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
WZW99467
LinkDB
All DBs
Position
1003367..1007242
Genome browser
AA seq
1291 aa
AA seq
DB search
MLDVNFYDELRIGLATADQIREWSHGEVKKPETINYRTLKPERDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRSNVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDI
APKDLEKVIYFAAYMITSVDEDARHRDLSSLEAKVEVERKQLASRRDADIETRMQKIEED
LAALEAEGAKADAKKRVRDGGERDVKAIRDRAQRDLDRLDAVWQRFRTLKVQDLEGDEIL
YREMKSRFGKYFEGFMGAEAIKRRLADFDLEAESENLRTIIQTGKGQRKTRALKRLKVVS
AFLSTTNSPIGMVLDAVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVTGPGNRPLKSISDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKNMALELFKPFVMKRLDDLNLAQNIKSAKRMVERQR
PVVWDVLEEVISEHPVLLNRAPTLHRLGIQAFEPQLIEGKAIQLHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARVLMLSTNNILKPADGRPVTLPTQDMIIGHYFLTTLREGQQGEGR
SFISKDEAHMAFDAGDLAINARITLRVRDAVPPEGVEARADGSFLLETTLGRALFNEALP
ADYPYVNGSVGKKQLGHIVNDLAERYQKVDVGRTLDRLKDIGFKWATRSGVTVSIADVQT
PPSKPEILATYDAKATKITRQFERGKVTEEERQQELVQLWTDATNELTAAMEANFTTDNP
IFMMVESGARGNMTQMRQIAAMRGLVANPKGEIIARPIKSNFREGLSVLEYFISTHGGRK
GQADTALRTADSGYLTRRLVDVSQDVIIREEDCGTERGLTKAIVEEGRDGRPVTAGDVET
AVYARTLASDIVGPDGEVLVAAGVDLGDVEIARLVEAGVTEVKVRSVLTCESALGTCAQC
YGRSLATGKIVDVGEAVGIVAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRVQELFEA
RTPKGKAPIAEAAGRVQIEEADRSRKLVVVRDDGEPDLEYPLPRRVRLEWEDAAGERHVI
ADGVHVEAGQQLTAGIRDPQDILRVNGLRRVQEYLVDEVQAVYRTQGAPIHDKHIEIIIR
QMLRRVTVIESGETTILPGDLVDRSFFEAANRQAVTEGRQPAQGRPVLMGITKASLATES
WLSAASFQETTKVLTDAAIHARSDSLVGLKENVILGKLIPAGTGLDRYRNIRVEPTAEAR
AAAYDLSYDPYDYDMASSGSGSLDDFDLDLG
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
gtgctggacgtcaacttctacgacgaattgcgcatcgggctcgccaccgcggaccagatc
cgcgagtggagccacggcgaagtcaagaagcccgagacgatcaactaccgcacgctcaag
cccgagcgtgacggcctgttctgcgagaagatcttcggcccgacccgggactgggagtgc
tactgcggcaagtacaagcgcgtccgcttcaagggcatcatctgcgagcgctgcggcgtc
gaggtgacccgcagcaacgtgcgccgcgagcgcatggggcacatcgagctggccgccccc
gtcacgcacatctggtacttcaagggtgtgcccagccggctgggctacctcctcgacatc
gcgccgaaggacctcgagaaggtcatctacttcgccgcctacatgatcacctcggtggac
gaggacgcccgccaccgcgacctgtccagccttgaggccaaggtcgaggtcgagcgcaag
cagctcgcgtcccggcgtgacgccgacatcgagacgcgcatgcagaagatcgaggaggac
ctcgcggccctggaggccgaaggcgccaaggcggacgccaagaagcgcgtccgcgacggt
ggcgagcgcgacgtcaaggcgatccgcgaccgcgcccagcgcgatctcgaccggctcgat
gccgtctggcagcggttccgcaccctgaaggtccaggacctcgagggtgacgagatcctc
taccgcgagatgaagagccgcttcggcaagtacttcgagggcttcatgggtgccgaggcg
atcaagcgtcgcctcgccgacttcgacctcgaggccgagtccgagaacctgcgcacgatc
atccagaccggcaagggccagcgcaagacccgcgcgctcaagcgcctcaaggtcgtctcg
gcgttcctcagcaccaccaacagccccatcggcatggtgctggacgccgtccccgtcatc
ccgccggacctgcgccccatggtgcagctcgacggtggccgcttcgcgacctccgacctg
aacgacctgtaccgccgcgtcatcaaccgcaacaaccgcctcaagcggctgctcgacctc
ggcgcacccgagatcatcgtcaacaacgagaagcggatgctccaggaggccgtggactcg
ctgttcgacaacggacgccgtgggcgtccggtcaccggcccgggcaaccggccgctgaag
tcgatctccgacatgctgaagggcaagcagggccggttccggcagaacctgctcggcaag
cgcgtcgactactcgggccgttcggtcatcgtggtcggcccgcagctcaagctgcaccag
tgcgggctgcccaagaacatggccctggagctgttcaagcccttcgtgatgaagcggctc
gacgacctcaacctggcgcagaacatcaagagcgcgaagcgtatggtcgagcgccagcgt
ccggtggtgtgggacgtcctcgaagaggtcatctccgagcaccccgtgctgctcaaccgc
gcgcccacgctgcaccgcttgggcatccaggcgttcgagccgcagctcatcgagggcaag
gcgatccagctgcacccgctcgtctgcaccgccttcaacgccgacttcgacggcgaccag
atggccgtgcacctgccgctgagcgcggaggcgcaggccgaggcccgcgtgctgatgctg
agcacgaacaacatcctcaagcccgccgacggccggcccgtgaccctgcccacgcaggac
atgatcatcggtcactacttcctcacgaccctgcgtgagggccagcagggcgaggggcgt
tccttcatcagcaaggacgaggcgcacatggcgttcgacgccggtgacctggcgatcaac
gcgcgcatcaccctgcgcgtgcgggacgccgtgccgccggagggggtcgaggctcgcgcc
gatggctccttcctgctcgagaccacgctgggccgcgccctgttcaacgaggccctgccg
gccgactacccctacgtcaacgggtcggtgggcaagaagcagctcggtcacatcgtgaac
gacctggccgagcgctaccagaaggtcgacgtcggtcgcaccctcgaccggctgaaggac
atcggcttcaagtgggccacccgctcgggtgtcaccgtctcgatcgccgacgtgcagacg
ccgccgagcaagcccgagatcctcgcgacctacgacgcgaaggccacgaagatcacccgc
cagttcgagcgcggcaaggtcacggaggaggagcgccagcaggagctcgtccagctgtgg
accgacgccaccaacgagctgaccgcggccatggaggcgaacttcacgaccgacaacccc
atcttcatgatggtcgagtcgggcgcccgagggaacatgacgcagatgcgtcagatcgcc
gccatgcgaggcctggtggccaacccgaagggcgagatcatcgcgcgaccgatcaagtcg
aacttccgcgagggtctgtccgtgctggagtacttcatctccacccacggtggccgcaag
ggccaggccgacacggcgctgcgcaccgctgactccgggtacctgacgcgtcgcctggtc
gacgtcagccaggacgtcatcatccgcgaggaggactgcggcaccgagcgtggcctgacc
aaggccatcgtcgaggagggtcgcgacggccgcccggtcaccgccggggacgtcgagacc
gccgtctacgcccgcacgctggcgtccgacatcgtcggccccgacggtgaggtgctcgtg
gccgccggcgtcgatctcggcgacgtcgagatcgcccggctcgtcgaggccggcgtgacc
gaggtcaaggtgcgctcggtgctgacctgcgagtcggcgctcggcacctgcgcccagtgc
tacggacgctcgctggccaccggcaagatcgtcgacgtcggcgaggccgtgggcatcgtc
gcggcgcagtccatcggcgagcccggcacccagctgacgatgcgcaccttccacaccggt
ggtgtggccggtgacgacatcacgcagggtctgccccgtgtgcaggagctcttcgaggcc
cggacgcccaagggcaaggcccccatcgccgaggcggcgggccgcgtccagatcgaggaa
gcggaccgctcccgcaagctggtcgtcgtccgcgacgatggcgagccggacctggagtac
ccgctgccgcgccgcgtccgcctcgagtgggaggacgcagcgggggagcgtcacgtgatc
gccgacggcgtgcacgtggaggccggccagcagctcaccgcgggcatcagggatccccag
gacatcctgcgcgtcaacggcctgcgccgggtgcaggagtacctggtggacgaggtgcag
gcggtgtaccgcacgcagggcgcgccgatccacgacaagcacatcgagatcatcatccgg
cagatgctccgccgcgtgacggtcatcgagtcgggggagacgacgatcctgcccggcgac
ctggtcgatcgcagcttcttcgaggccgcgaaccgtcaggccgtcaccgagggccgccag
cccgcccagggtcgtccggtgctcatgggcatcaccaaggcgtcgctcgccaccgagagc
tggctctcggcggcgtccttccaggagacgacgaaggtgctcacggacgcggcgatccac
gcgcggtcggacagcttggtgggtctcaaggagaacgtcatcctgggcaagctcatcccg
gccggtaccggtctcgatcggtaccgcaacatccgggtggagcccacggcggaggcgcgc
gccgcggcgtacgacctgagctacgacccgtacgactacgacatggcgagcagcggttcg
ggatctttggacgacttcgatctcgatctcggctga
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