Propioniciclava soli: PCC79_10465
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Entry
PCC79_10465 CDS
T10107
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
psoi Propioniciclava soli
Pathway
psoi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psoi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PCC79_10465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psoi03019
]
PCC79_10465
03009 Ribosome biogenesis [BR:
psoi03009
]
PCC79_10465
Enzymes [BR:
psoi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PCC79_10465
Messenger RNA biogenesis [BR:
psoi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PCC79_10465
Ribosome biogenesis [BR:
psoi03009
]
Prokaryotic type
rRNA processing factors
PCC79_10465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
WZW97338
LinkDB
All DBs
Position
complement(2338955..2341750)
Genome browser
AA seq
931 aa
AA seq
DB search
MLDSDTPINPANGEEQNPQQDAPQRAPRRRRAASRPAGPPRAIETPPKAIETPPKAIETT
AQPAEIAPAAEPDAVEVEWTEVQGTTEVEVVGESSPRLDTGDAAPTESVVVDVTPDEASD
DGPEPQVESAGDPAADEDPADEQAAGEQAADGAAEVGTPADAQEVPAELEAILDAEDDNE
IDGAIDALMNTERNTPSRGRRRRPSRRGEAEASEEDARPADVAAALDDLAAALGGQPTRD
ADPEPDGGADERRRDGRDDEAPTEDDTDADADADDDGNENDDADGDEGDDSGEGSPRRRR
RRRGGRRRRRGSGSDEGDDSEGDDDSSDDSDSDPGSDGPGEPEEKSEDEQGPEGDETGAG
SPGRRRRRRRRRGEDTGTEDEDGVDVVVKVREPRRSRGSGSASDEITGIEGSTRMEAKRQ
RRKEGRAAGRRRAPVLSEAEFLARRESVERQMLIRQTDEYTQIGVLEDGVLAEHYVDRDS
SASLIGNVFLGRVQNVLPSMEAAFIDIGRGRNAVLYAGEVDWDSFGVTGDDRKVEKVLKS
GQSILVQVTKDPVGAKGARLTAHISIPGRYVVYCPGGQLSGISRKLPDNERQRLKGILDE
AVDSDASVIVRTAAEGASEEELVRDVSRLKAQWEVIEKKKSGSAPQLLYAEPDLTVRIVR
DLFTEDFSKLIVDGDGAWEMLEAYVTHVAPHLEDRLRRWDREAEGDVFDVFRVHEQVSKA
LERKVHLPSGGSLVIDRTEAMTVIDVNTGKFTGTQGNLEATVTSNNLEAAEEIVRQLRLR
DIGGIIVIDFIDMVLPANRELLLRRLVECLGRDRTRHQVAEVTSLGLVQMTRKKIGTGLH
EAFTVPCDHCSARGYHVHDAPVATQAQADGGDREGRRGGGNGNRRGGRNRRSDGNGSNDQ
ADQGNGSSQGGSGQGGSGQGGAAEGGSDGGA
NT seq
2796 nt
NT seq
+upstream
nt +downstream
nt
atgctcgattcggacacaccgatcaaccccgccaacggcgaggagcagaacccccagcag
gacgccccgcagcgcgccccgcgccgccgccgtgcggccagccgccccgccggcccgccg
agggccatcgagaccccgccgaaggccatcgagaccccgccgaaggccatcgagaccaca
gcgcaaccggccgagatcgcaccggccgccgagcccgacgccgtcgaggtggagtggacc
gaggtgcagggaacgaccgaggtcgaggtcgtcggcgaatcctccccgcggttggacacg
ggggatgccgcgccgaccgaatcggtcgtcgtcgacgtcacgccggacgaggcctccgac
gacggtcccgaaccccaggtcgaatcggcgggcgacccggccgccgacgaggaccccgcc
gacgagcaggccgctggcgagcaggccgccgacggcgccgcggaggtcggcaccccggcg
gacgcccaggaggtgcccgccgagctcgaggccatcctcgacgccgaggacgacaacgag
atcgacggcgccatcgacgcgctgatgaacaccgagcggaacaccccgtcgcgtggccgg
cgccgtcggccgtcgcgccggggcgaggcggaggcgtccgaggaggacgcccgccccgcc
gacgtggccgccgcgctcgacgacctcgccgcggcgctcggtggtcagccgacccgcgac
gccgaccccgagcccgacggcggcgccgacgagcggcgccgtgacgggcgcgacgacgag
gcccccacggaggacgacaccgacgccgacgcggatgcggacgacgacgggaacgagaac
gacgacgcggacggcgatgagggcgacgacagcggcgagggatcgccgcgtcgccggcgt
cgccgccggggtggccgtcgccggcgtcggggtagtggctccgacgagggagacgattcc
gagggcgacgacgactcctccgacgactctgactccgaccccggcagcgacggacccggc
gagcccgaggagaagtccgaggacgagcaggggcccgagggagacgaaaccggtgccggc
tctccgggccgccgtcggcgtcggcgccggcgccgcggtgaggacacgggcaccgaggac
gaggacggcgtcgacgtcgtggtcaaggtccgggagccccgccgcagccgcgggtcgggc
tcggcgtccgacgagatcacgggcatcgagggatcgacccgcatggaggccaagcgccag
cggcgcaaggaggggcgtgcggccggccgccggcgggcgcccgtgctgtccgaggcggag
ttcctggcccgccgggagtccgtcgaacggcaaatgctgatccgccagaccgacgagtac
acccagatcggcgttctcgaggacggcgtcctggccgagcactacgtcgaccgggacagc
tcggcgtcgttgatcggcaacgtcttcctcgggcgggtgcagaacgtgctgccctccatg
gaggcggcgttcatcgacatcggccgcggccgcaacgccgtgctctacgccggtgaggtc
gactgggactccttcggcgtgaccggcgacgaccgcaaggtcgagaaggtgctcaagagc
gggcagtcgatcctcgtccaggtgacgaaggacccggtcggcgccaagggcgcccgtttg
acggcgcacatctccatcccgggccggtacgtcgtgtactgccccggtggtcagctctcc
ggcatctcccgcaagctgcccgacaacgagcggcagcgcctcaagggcatcctcgacgag
gcggtcgactcggacgccagcgtgatcgtccgcaccgccgccgagggggcgtccgaggag
gagctcgtccgcgacgtgagccgcctcaaggcgcagtgggaggtcatcgagaagaagaag
tccggcagcgcgccgcagctgctctacgccgagcccgacctcacggtgcgcatcgtccgt
gacctgttcaccgaggacttcagcaagctcatcgtggacggcgacggtgcgtgggagatg
ctggaggcctacgtcacgcacgtggccccgcacctcgaggaccgcctgcggcggtgggac
cgtgaggccgagggcgacgtcttcgacgtcttccgcgtgcacgagcaggtgagcaaggcg
ctcgagcgcaaggtgcacctgccctccggcggctccttggtcatcgaccgcaccgaggcg
atgacggtcatcgacgtcaacaccggcaagttcaccggcacccagggcaacctggaggcg
acggtcacctccaacaacctggaggcggccgaggagatcgtccgccagctccggctgcgc
gacatcggcggcatcatcgtgatcgacttcatcgacatggtgctgcccgccaaccgtgag
ctgctgctgcgccgcctggtggagtgcctgggccgtgaccggacccgccaccaggtggcc
gaggtcacctcgctgggcctggtgcagatgacccgcaagaagatcggcaccggtctccac
gaggcgttcacggtgccctgcgaccactgctcggcccgtggctaccacgtgcacgacgcc
cccgtcgccacgcaggcccaggccgacggcggcgaccgggagggacgccgcggcggcggc
aacggcaaccgtcgcggcggccggaaccgacgttccgacggcaatggcagcaacgaccag
gcggaccagggcaacggctcctcccagggcggctccggccaaggtggttccggccagggt
ggcgcggcggagggcggttcggacggcggggcgtga
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