Propioniciclava soli: PCC79_14900
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Entry
PCC79_14900 CDS
T10107
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
psoi Propioniciclava soli
Pathway
psoi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psoi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PCC79_14900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psoi03019
]
PCC79_14900
03400 DNA repair and recombination proteins [BR:
psoi03400
]
PCC79_14900
Enzymes [BR:
psoi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PCC79_14900
Messenger RNA biogenesis [BR:
psoi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PCC79_14900
DNA repair and recombination proteins [BR:
psoi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PCC79_14900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HTH_IclR
AAA_30
RecQ_Zn_bind
Pribosyltran
Dimerisation
Motif
Other DBs
NCBI-ProteinID:
WZW98158
LinkDB
All DBs
Position
3297016..3299307
Genome browser
AA seq
763 aa
AA seq
DB search
MSNRGPVEPPSWPDEPPPDFDELPPDDLWDAVPPRDAPEPAAPSIAVQRDAAGLREEAVA
ILRDLTGRADADFHPGQYEAIEALVAEHRRALVVQRTGWGKSAVYFIAALLQRRAGAGPA
LIVSPLLALMRDQVAAAERAGVRAAAINSANVTEWRSIEEQLDADAVDVLFVSPERLVNP
KFRAEQLPRLVRTCGLLVVDEAHCISDWGHDFRPDYRRIRDLIAELPAGVPVLATTATAN
ARVVADVEEQMAAGGHAVFTLRGALARDSLRLGVLDVGTPARRLAWLAEHLDALPGSGIV
YCLTVSGAEDAARLLASAGHRVLPYTGRTDAAEREAAEEALKANEVKALVATSALGMGFD
KPDLGFVVHLGAPSSPVAYYQQVGRAGRATPSADVLLLPGTEDREIWHYFATNAMPTQAR
ADAVLACLAEAGGPLSVPALEARVDIRRGPLELLLKVLAVDGVVENVQGGWIGTGRPWTY
DAERYERIAAARVAEQEAMLGYERLAGDGCRMQFLTDALDDPHAARCGRCDVCAEPWYPT
EITVANLTEAQDTLDRVGVPVAPRALWPNGLDTLGVLADGAPVKGKIPPAEQVEEGRVVA
RLTDLGWGGRLRDLFAPDAEGRQPDAPVPPELGAAVVRVLAGWGWSERPVAVAWVPSLTR
PALVESLATGVARVGRLEVLGSLDLAAGAEPLNRSTNSAYRVRDVWGRFTVGEAMTRRLG
ELEGPVLLIDDLIDSRWTLTVAGRLLRRAGAASVLPLALASVA
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaccgtgggccggtcgaacctccctcctggccggacgagccgccgccggacttc
gacgagctgccgcccgatgatctgtgggacgcggtgccgccgcgcgacgcacccgagccg
gccgcgccgtcgatcgcggtgcagcgcgacgcggcggggctgcgggaggaggcggtggcg
atcctgcgcgacctgaccggacgcgcggacgcggacttccaccccggccagtacgaggcc
atcgaggcgctggtggccgagcaccgccgcgcgctcgtggtgcagcgcaccgggtggggc
aagtcggcggtgtacttcatcgcggcgttgctgcagcggcgcgccggggcggggccggcg
ctcatcgtgtccccgttgctggcgttgatgcgcgaccaggtggccgcggccgagcgggcc
ggcgtccgcgctgcggcgatcaactcggcgaacgtcaccgagtggcgctcgatcgaggag
cagctggacgccgacgccgtcgacgtgctgttcgtgtcgccggaacgcctggtcaacccg
aagttccgggccgagcagctgccgcggctcgtgcgcacgtgcgggctgttggtggtggac
gaggcgcactgcatcagcgactggggccacgacttccggcccgactaccggcgcatccgc
gacctcatcgccgagctgccggccggcgtccccgtgctggcgaccaccgcgacggccaac
gcccgcgtggtcgccgacgtggaggagcagatggccgccggcggtcacgccgtgttcacg
ctgcggggtgcgctggcgcgcgactcgttgcgtttgggcgtccttgatgtggggacgccc
gcgcgccgcctcgcgtggctcgccgagcacctcgacgcgctgccgggctcgggcatcgtg
tactgcctcaccgtgagcggggccgaggacgcggcgcgcctgctggcgagcgccgggcac
cgggtgttgccctacaccggccgcaccgacgccgccgagcgcgaggcggcggaagaggcg
ctgaaggccaacgaggtgaaggccctggtggcgacctcggcgctcggcatggggttcgac
aagcccgacctcgggttcgtcgtgcacttgggtgcgcccagctcgccggtggcgtactac
cagcaggtgggccgcgccggccgcgcgaccccgagcgccgacgtcctgctgctgcccggc
accgaggaccgggagatctggcactacttcgccaccaacgcgatgcccacccaggcccgg
gcggacgccgtgctggcctgtctggccgaggccggcgggccgctctcggtgccggcgctg
gaggcacgcgtcgacatccggcgcggcccgttggagctgctgctgaaggtgctggcggtc
gacggcgtggtggagaacgtgcagggcgggtggatcggcaccggacgtccatggacctac
gacgccgagcgctacgagcgcatcgccgccgcgcgcgttgccgagcaggaggcgatgctc
ggttacgagcgcctggcgggcgacgggtgccggatgcagttcctcaccgatgcgctcgac
gacccccacgccgcgcgctgcggccgctgcgacgtgtgcgccgagccgtggtaccccacc
gagatcacggtggcgaacctcaccgaggcccaggacaccctggatcgggtcggcgtcccc
gtcgcgccgcgggcgctgtggcccaacgggctcgacacgctgggggtgctggccgacggc
gcgcccgtgaagggcaagatcccgccggccgagcaggtcgaggagggccgggtcgtcgcc
cggctcaccgacctcggctggggtggccgcctgcgcgacctgttcgcccccgacgccgag
ggccgccaacccgacgcccccgtgccgcccgagctgggcgccgcggtggtgcgggtgctg
gccggctggggctggagcgagcggccggtggccgtggcctgggtgccgagcctgacgcgt
ccggccctggtggagtccctggccacgggagtcgcccgcgtcggacgcctcgaggtgctc
gggtcgctggatctggccgcgggggccgagccgctcaaccgctcgaccaactcggcctac
cgggtgcgcgacgtgtggggacgcttcacggtcggcgaggcgatgacccggcggctgggc
gagcttgagggcccggtgctgctgatcgacgacctgatcgactcccgctggaccctgacc
gtcgccggacgcctcctccgccgcgccggagcggcctccgtcctccccctggcgttggcg
tccgtggcctga
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