Phytophthora sojae: PHYSODRAFT_260474
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Entry
PHYSODRAFT_260474 CDS
T03459
Name
(RefSeq) hypothetical protein
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
psoj
Phytophthora sojae
Pathway
psoj03022
Basal transcription factors
psoj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psoj00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
PHYSODRAFT_260474
09124 Replication and repair
03420 Nucleotide excision repair
PHYSODRAFT_260474
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psoj03021
]
PHYSODRAFT_260474
03400 DNA repair and recombination proteins [BR:
psoj03400
]
PHYSODRAFT_260474
Transcription machinery [BR:
psoj03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
PHYSODRAFT_260474
DNA repair and recombination proteins [BR:
psoj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
PHYSODRAFT_260474
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PH_TFIIH
BSD
Motif
Other DBs
NCBI-GeneID:
20639183
NCBI-ProteinID:
XP_009515649
JGI:
Physo3_260474
UniProt:
G4YG31
LinkDB
All DBs
Position
Unknown
AA seq
500 aa
AA seq
DB search
MSDVLVALVRVKKRDGRAEFSAAGLRWTADVSPEAPAGQHPPIVVPWSTVQDQQVSSLSS
PKAMIRLRLAHNATLVLEFVAESGSLEEAFEVREQAKELIARRLRENGARGTRSNAAALC
NPTEIKQRAALLAANPALKRQHTEMYNLNAEVIHQIFIQYPAVYRAYQGQVPDKMTETEF
WGAFFKSKYFHRDRKAGHEDMFTKYEEKEKEESKGVTIDPRGIVDPLIDLTSTEEDAAVH
HAKRQTTEKENPSSITIAKFNRHGAYVLDPAHAGKLQQQKAGKGKAQQALPQKKPKAGYL
DNLVDATLLDDLQNKAPPPYNPLTLEDESRYFQHAEKGTAADGNTTGKLSLMDAAQVFQA
TCKAPIKLDNAYPSSTTCFNVLAEVVACSDSTSDSASASSAANLASGALAAEYIPNEFKK
QVYNQFHDVCELLRHFLSFKAKVAEGGGPDAQRKLNKIVEKMGSKYDELVKLRESLPPHE
KNLLAPLLKPFDDQLNLAFI
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacgtcctggtggcgctagtgcgcgtcaagaagcgcgacgggcgcgccgagttc
tcggccgcggggctgcgctggacggccgacgtgtctcccgaggcgcccgcgggccagcac
ccgcccatcgtggtgccctggagcaccgtgcaggaccagcaggtgtcgtcgctctcgagc
cccaaggccatgatccgactgcggctcgcgcacaacgcgacgctcgtgctggagttcgtg
gcggagtccggcagcctggaggaggccttcgaggtgcgcgagcaggccaaagagctgatc
gcgcgccgcctgcgcgagaacggggcccgagggacgcgctccaacgccgcggcgctgtgc
aaccccacggagatcaagcagcgtgcggctctactggcagccaacccggcgctcaagcgg
cagcacacagagatgtacaacttgaacgccgaggtgatccaccagatcttcatccagtat
ccggccgtgtacagggcgtaccaggggcaggtgccggacaaaatgacggagacggagttc
tggggagccttcttcaagtccaagtacttccatcgtgacaggaaggctggccacgaggac
atgtttaccaagtacgaggaaaaggagaaggaagagtcgaagggcgtgacgatcgacccg
cgcgggattgtggatccgttgattgacctcacgagcacagaggaagacgctgcagtgcac
catgcgaagcggcaaacgacggagaaggaaaacccatccagcattacgatcgccaagttt
aacaggcacggcgcttacgtgcttgatccggcacacgcagggaaactgcagcagcagaag
gcggggaaaggaaaagcgcagcaagcgctgccacagaaaaagcccaaggcaggttacctc
gacaacctggtggatgcgacactgctggacgatctgcagaataaagcgccaccaccgtac
aatccgcttacattggaggacgagtcgcgctacttccagcatgcggagaagggcactgcc
gccgatggcaacacaacaggcaagctgtcactcatggacgcagcgcaggtgttccaagcg
acgtgtaaggcaccgatcaaactggacaacgcctatccgagctccacgacatgcttcaat
gtactggccgaagtcgtggcgtgctcggactccaccagcgactcggcttcagcttcttcg
gctgcgaacctggcaagcggtgcactggcggctgagtacatccccaacgagttcaagaag
caagtttacaaccagttccacgacgtgtgcgagctgttgcggcacttcctctcgttcaag
gccaaggtggcagaaggcggcggcccggacgctcagcgcaagctcaacaagatcgtggag
aagatggggtccaagtacgacgagctggtgaagctgcgcgagtcgctgcctccgcacgaa
aagaacctgctggccccgctgctcaagccattcgacgaccagctcaacctggcctttatt
taa
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integrated database retrieval system
