Phytophthora sojae: PHYSODRAFT_300538
Help
Entry
PHYSODRAFT_300538 CDS
T03459
Name
(RefSeq) hypothetical protein
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
psoj
Phytophthora sojae
Pathway
psoj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
psoj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PHYSODRAFT_300538
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
psoj03041
]
PHYSODRAFT_300538
Enzymes [BR:
psoj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PHYSODRAFT_300538
Spliceosome [BR:
psoj03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
PHYSODRAFT_300538
Complex C
U4/U6.U5 tri-SnRNP related factors
PHYSODRAFT_300538
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
Flavi_DEAD
AAA_30
Motif
Other DBs
NCBI-GeneID:
20641872
NCBI-ProteinID:
XP_009526535
JGI:
Physo3_300538
UniProt:
G4ZFG1
LinkDB
All DBs
Position
Unknown
AA seq
958 aa
AA seq
DB search
MAGGDTRGSRRSDGFSRRRRRSPSDEDTSTRSQDAGDHSDVEIIHDFRSKRELEAAEDEA
KLTPEARERLRDREERDAFAERLRQRDEDRTKRKRKADELEASEGAGGLTRDEIKQLATR
GTVDAGQDALGDKLRRLRELSRQEYLKKREEKELELLEFQLKDEDVLFEGGKRSRKEEEQ
LELNRRILETAKARSKKEETEGYQIPDSYEEVDDEGNRIRKKEDLLTDRYEEEEVFHTEQ
EVWEETQVKMATSRFGAKDKRKKKTEEEDELVFDDQIDFISQQMLSGHHVSDEDVKEARK
KMEEAKHLSIQEGRKQLPVYPYRESLLEAIRNYPVIIIEGETGSGKTTQIPQYLHEVGYS
ELGTIGCTQPRRVAAMSVAARVAQEMDVKLGNEVGYSIRFEDCTSDKTVIKYMTDGMLLR
EFLTEPDLKSYSVMIIDEAHERTLNTDILFGLIKDIARFRDDIKIIVASATLDATKFSAY
FDDAPIFKIPGRMFPVDILYTKAPEADYLDAAIVTVLQIHITQPLGDILVFFTGQEEIEA
AEEILLQRTRGLGSRIRELLIRPIYATLPSERQAQVFEPTPEGARKVVLSTNIAETSLTI
AGICYVIDTGFCKQTNYNAQTGMESLLVAPVSQAMANQRAGRAGRTAPGKCFRLYTAWSY
KNELDENTVPEIQRTNLASVVLLMKSLGINDLLHFDFMDPPPEKALIRSLEQLYALGALN
GLGELTKLGRRMAEFPLDPMMSKALLASEKFGCTEEVMTICAMLSVNNSIFYRPKDKAVH
ADNARLNFARGGGGDHITLMNVYNQWVETNYSTQWTYENFVIMRSLKTARDVREQLEGLC
DRVELERTSNRSDHEPIRKAICAGYFYNTAKLDNSGHYKTVKKAQSVYIHPSSCLIKLEE
VPRWVVYHELAFTTKEYMRNVIPIKSEWLMELAPHYYKNKEVEDARTKKMPKAVGRAG
NT seq
2877 nt
NT seq
+upstream
nt +downstream
nt
atggcaggtggcgatacgcgcgggtcgcggcgctctgacggcttctcccgtcgccggcgc
cgcagccccagcgacgaggatacctccacacgctcgcaggatgcaggcgaccactctgac
gtcgaaattatccacgacttccgctccaagcgcgagctggaagccgccgaagacgaggct
aagctgacgcccgaggcgcgcgagcgactgcgcgaccgcgaggagcgcgacgccttcgcc
gagcgattacgtcagcgcgacgaggaccggaccaagcgcaaacgcaaggccgacgagctg
gaggcgtccgaaggcgcgggcggactcacgcgcgacgagatcaagcaactggccacgagg
gggacagttgacgctggacaggacgcgctcggggacaagctgagacgcctccgcgagctg
agcaggcaggaatacctcaaaaagagggaggagaaggagctggaactgctggagttccag
ctgaaagacgaggacgtgctctttgagggcggcaagaggtccaggaaggaggaggagcag
cttgagctcaaccggaggatcctggagacagccaaggccaggtccaagaaagaggagacc
gagggctaccagatccctgactcctatgaggaggtggacgatgagggcaacaggatcagg
aagaaggaggatttgctgacggacaggtatgaggaggaggaggtgttccacacggagcag
gaggtgtgggaggagacgcaggtcaagatggctacgagcaggttcggagccaaggataaa
cgcaagaagaagacggaggaggaggatgaactggtctttgacgaccagatcgacttcatc
tcgcagcagatgctctcagggcatcatgtgagtgacgaggacgtcaaggaagcgagaaag
aagatggaggaggccaagcacctgagcattcaagagggaaggaagcagctacctgtgtac
ccctatcgtgaatcgctgctggaagcgattcggaactatcctgtcattatcattgaagga
gaaacgggatcgggcaaaacgacgcagattccacagtatctgcatgaggttgggtactcg
gagctgggcactattggctgtacgcagccaagacgtgtcgctgcgatgagtgtggctgcg
cgtgtggcacaggaaatggatgtgaaactgggcaatgaagtgggatactcgattcgtttc
gaggactgcactagcgacaagactgtgatcaagtacatgacggatggtatgttgctacgt
gagtttttgaccgagccagacttgaagtcgtacagtgtcatgatcattgatgaggcgcac
gaacggaccttgaacacggatattttgttcggcctcatcaaggatatcgcgcgtttccgt
gatgatatcaagatcatcgtggctagtgcgacgctggatgcaactaagttcagcgcttac
ttcgacgatgccccgatttttaagatccccggacgcatgttccccgttgatattctgtac
acgaaggctcctgaggctgactacctggatgcggccatcgtgacagtcctccagattcac
attacccagcccctcggagacatcctcgtcttctttactggccaagaggaaatcgaagca
gccgaagagatattactccagcgcacccgtggccttggttctcgaatacgcgagctgctc
attcgaccgatttacgcaaccttgccttcggaacgccaggctcaggtgtttgagccaact
ccagagggagctcgcaaggtggtgctgagtacgaatattgcggagacatcgttgaccatc
gcaggcatctgctatgtgattgatacaggcttctgcaagcagacgaactacaacgcgcaa
accggcatggagtctttgctggtggcgccagtgtcgcaggctatggcaaaccagcgtgct
ggtcgtgcaggtcgtacagcgcctggcaagtgcttccgtctgtacacagcgtggtcgtac
aagaacgagctggacgagaacacagtgcccgaaattcagcgcacgaaccttgccagtgtt
gtgctgctcatgaagtcgctaggtatcaacgacctgcttcacttcgacttcatggaccct
ccacctgagaaggcactcattcgctcgttggagcaattgtacgctctcggagctctgaat
ggcctgggtgaactcacgaaacttggtcgtcgaatggctgagttcccgttggaccccatg
atgtccaaggcactgcttgcttcggaaaagttcggctgcaccgaagaagtgatgacgatc
tgcgccatgctgagtgtcaacaactcgatcttctaccgacccaaggacaaggccgtccac
gctgataacgcgcgcctgaacttcgctcggggcggtggcggtgaccacatcacgttgatg
aatgtctacaaccagtgggtcgagacgaactactcgacgcagtggacctacgagaacttc
gtgatcatgcgctcactaaagactgcgcgcgacgtccgagagcagctcgaaggcctctgc
gatcgcgtggagctggagcgtacgagcaaccgcagcgaccacgagccgatccgcaaggcc
atctgcgccggctacttctacaacacggccaagctggacaactcgggccactacaagacg
gtcaagaaggcgcagtccgtgtacatccacccgagctcgtgcctcatcaagctggaagaa
gtcccgcgctgggtcgtgtaccacgagctggccttcacgacgaaggaatacatgcgcaac
gtgatccccatcaagtccgagtggctgatggagctcgcgccgcattattataaaaacaag
gaggtcgaggacgctcgcacgaagaagatgcccaaggcggttggccgggctggttaa
DBGET
integrated database retrieval system
