Phytophthora sojae: PHYSODRAFT_304396
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Entry
PHYSODRAFT_304396 CDS
T03459
Name
(RefSeq) hypothetical protein
KO
K14554
U3 small nucleolar RNA-associated protein 21
Organism
psoj
Phytophthora sojae
Pathway
psoj03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
psoj00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
PHYSODRAFT_304396
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
psoj03009
]
PHYSODRAFT_304396
Ribosome biogenesis [BR:
psoj03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
PHYSODRAFT_304396
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Porphobil_deam
Utp21
WD40_Prp19
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Porphobil_deamC
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_DCAF4
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
Beta-prop_HPS5
Beta-prop_RIG_2nd
Beta-prop_Vps41
Beta-prop_LRRK2
WD40_MABP1-WDR62_1st
Beta-prop_NWD2_C
Beta-prop_WDR11_2nd
Beta-prop_Nup120_160
Cytochrom_D1
Beta-prop_DCAF12
Beta-prop_IFT122_1st
Beta-prop_KIB1-4
VPS8_N
Motif
Other DBs
NCBI-GeneID:
20642411
NCBI-ProteinID:
XP_009533299
JGI:
Physo3_304396
UniProt:
G5A0L8
LinkDB
All DBs
Position
Unknown
AA seq
1452 aa
AA seq
DB search
MTATETAAAAKTETPKRTIYVSSRKSQLAMAQTNTVIAMLEVKFPALRFVVGQQDTVGDQ
VLDRHLSELGTSTASGLFTKSLEDALLAKTASFAVHSLKDMPTTLPDGLVLAAITKRESP
EDAAVIHPKHKAKGLTTLKQLPEGSVIGTSSLRREALLRQQFPTFEIKTLRGNIQTRLAK
LDGHDDYDAIIVAACGFRRGELGDRIDEILPMDTFGYGVGQGSIGVECRADDEETIEMLK
TITDEKSAQLCKAERSLLYHLEGGCQIAMGVSATLDEDTLTLNSTVLSRDGKESVHESIS
GPRTEAENLGKQLAQRFWDNELARKVLGKTGQKRALTYGDAEAPGDAAAAAEKAASEVRN
AWFQSFRSCSPNDSSGCSFTGVAVRVSASISLGSARLAVHHKAQRLASLKLPVALVTAPY
RARPRQITETMTSDQLTRCQNSRVLQAFRAIGVVADDVPVVWYGMGKSSFATASLGKSFA
VYNCDKLTPVLVSPQLPKRIAALAVFPRKHVTFTACGRQIIVWRRADRWKTLVGHKGAVK
QMITVGTVLFSLDDERNIMIWDLETMKLVDTLSFPIGFTPTAMMHPDTYLNKILIGSEEG
ALQLWNVRKMKCIYEFKGWGSAVTALEQSPAVDVVSIGLADGRLMVHHLQLDERVMDFKQ
EQQSSITAMSFRTDAGASTTPLVVSGSRSGDIAVWNLQTKRLESVIAAAHDGAVVSLQFL
SNEPLLLSSGSDNSIKLWIFDHLNGGTARLLKSREGHRAPPTRIRYYGNNTLATMADGAD
GTCCQILSAGQDRAFRVFHTAREQQSRELSQGPVLKKARRLNVRVEDLKLPPIAQFAAME
TRERDWANVITCHENEIAAYVWRFENRAIGKKVLRQFDPSKRVPSGSAEDLRRKKTQATS
VAISSCGNYALVGSLGGCIFRYNMQSGEARGSFPVSATPKAKIIRSLVLPGTDMSALQDN
DVEKTAGDAHDGPVSAVAVDALNETLVSAGIDGKLKFWGFKKHELRYEIDIGSPISQMEL
HRDSNLLCVACDDQVLRLYDVTTHKLVRRFAGHSHRVTDMTFSSDARWLFSSSADASLRV
WDIPTGKCVDWLRFHKPVTGLAVSPTGEFLATTHVGHVGIFLWANRSFFTEVFLDSEPAE
PVLMDMPVSLNEVDNSDQLGYGTERNPQLSVLSVDEQQSQSSKVEKGEESSEPLDASLIT
LSTAPRAFWQSLFNLELIKKRNKPIEPPKAPEQAPFFLQTARKDDVHPTFVPVAPEAKKE
TKKKEEDEDVAMDGWGVGDDDEAWGDDDGEEPEDDAEVAAPSSRIVKTEGIVTSRCKLAT
LLAKAIKLEEEEDDTVSRFHEVAVYMQSLSASAVDVEMSTLCMGDFDEEGKKLLGRFLDF
LREEMRTRRDFQVLQAYLNRFLKLHEELLVADPALLAQVDELGSLQQQQWQHLQKLLHNN
LCLVQYLSKIQM
NT seq
4359 nt
NT seq
+upstream
nt +downstream
nt
atgactgcgactgagactgctgccgcggccaagacggagacgcccaagcgcaccatctac
gtgtcgtcgcgcaagagccagctggccatggcgcagaccaacacggtcatcgccatgctg
gaggtcaagttcccggcgctgcgcttcgtcgtggggcagcaggacacggtgggcgaccag
gtgctggaccgccacctgagcgagctgggcacgagcacggcctcgggcctcttcaccaag
agcctagaggacgcgctgctggccaagaccgccagcttcgccgtgcactcgctcaaggac
atgcccacaacgctgcccgacgggctcgtgctggccgccatcaccaagcgcgagagcccc
gaggacgcggccgtgatccaccccaagcacaaggccaagggcctcaccacgctcaagcag
ctgcccgagggcagcgtcatcggcaccagctcgctgcggcgcgaggcgctgctgcgccag
cagttcccgaccttcgagatcaagacgctgcgcggcaacatccagacgcggctggccaag
ctggacgggcacgacgactacgacgccattattgtggcggcgtgcggcttccggcgcggc
gagctgggcgaccggatcgacgagattctgcccatggacacgttcggctacggcgtcgga
caggggagcatcggcgtcgagtgccgcgcagacgacgaggagacgatcgagatgctcaag
acgatcacagatgaaaagtcggcgcaactctgcaaggccgagcgtagtctgctctaccat
ttggagggaggatgccagatcgcgatgggcgtgagcgcgacgctggatgaggacacgctg
acgttgaactcgacggtgttgtcgcgtgacggcaaggagagcgtccacgaatcgatctct
ggaccgcgcacggaggctgagaacctgggcaagcagctggcgcagcgcttctgggacaac
gagctggcccgcaaggtgctgggcaagaccggccagaagcgcgccctgacgtacggagac
gccgaagcgcccggtgacgccgctgccgccgctgaaaaggctgcctccgaagtacgaaat
gcttggttccagtcatttcggagctgctcgcccaacgactcaagtggctgctccttcact
ggtgttgcggtgcgcgtctcggcgtcaatctccctcggttcggcgcgactcgctgttcac
cataaagcccagcgtctggcgtctctgaagctgccggttgcactcgtcaccgccccgtac
cgcgcgcgccctaggcagataacggaaaccatgaccagcgaccagttgacgcgctgccag
aactcgcgcgtgctgcaggcgttccgcgccatcggcgtggtggccgacgatgtgcccgtt
gtgtggtacggcatgggcaagtccagcttcgccacggcctcgctgggcaagtccttcgcc
gtgtacaactgcgacaagctcacgcccgtgctggtgtcgccccagctgcccaagcgcatc
gcggcgctggcggttttccccaggaagcacgtgacgtttacggcctgcgggcgccagatc
atcgtctggcggcgcgcggaccgctggaagacgctggtgggccacaagggcgccgtcaag
cagatgatcacagtcggcaccgtgctcttctcgctcgacgacgagcgcaacatcatgatc
tgggacctggagacgatgaagctggtggacacgctgagcttcccgattggcttcaccccg
acggccatgatgcacccggacacgtacctgaacaagatcctcattggctcggaggagggc
gcgctgcagctctggaacgtccgcaagatgaagtgcatctacgagttcaagggctggggc
agcgccgttacggccttggagcagagtcctgcggttgacgtggtgagtatcggactggcg
gacggaagactgatggtgcaccacctgcagctggacgagcgcgtcatggacttcaagcag
gagcagcagagcagcatcacggccatgtccttccgcaccgacgcaggcgcgtcgacgacc
ccgttggttgtgtctggatcgaggtcgggagacatcgcggtctggaacctgcagaccaag
cggctcgagtcggtcattgctgctgctcacgacggcgccgtggtgtcgctccagtttttg
agtaacgagccgctgctgctgtcgtccggctccgacaactcaatcaagctctggatcttc
gaccacctgaacggtggcaccgctcgtcttctcaagtcgcgcgagggccaccgcgccccg
cccacgcgtattcgctactacggcaacaacacgctcgctactatggccgacggtgctgac
ggcacgtgctgccagattctgtccgcaggccaagaccgcgccttccgtgtgttccacacg
gcgcgtgagcaacagagcagggagctatcgcaggggcccgttctgaagaaggctcgccgg
ttgaatgtgcgcgtggaagatctgaagctgccgccgatcgcgcagtttgccgccatggag
acgcgcgaacgcgactgggctaacgtcatcacgtgccacgagaacgagatcgctgcttac
gtgtggcgtttcgagaaccgcgccattggtaagaaggtgcttcgccagttcgaccccagc
aagcgtgtgccttcgggcagtgctgaggacctgcgccgcaagaagactcaggctaccagt
gtggccatcagttcgtgcggcaactacgctcttgtgggtagcttgggtggttgcatcttc
cgctacaacatgcaatccggtgaggctcgtggatcattcccagtttcggccactccgaag
gcgaagatcatccgttcgttggtgctgccgggcacggatatgtcggctctgcaggacaat
gacgtcgagaagacggcgggtgatgctcacgacggacctgtcagcgccgtggccgtggat
gccctcaacgagacgctggtttcggctggcattgacggtaagctcaagttctggggtttc
aagaagcacgagctgcgctacgagatcgatatcggctcccctatcagtcagatggagctg
caccgtgacagcaacttgctctgcgtggcgtgcgatgaccaggtgctgcgtctgtacgac
gtgacgactcacaagctcgtccgtcgctttgccggtcactcgcaccgtgtgacggacatg
acgttcagctcggacgctcggtggctgttctcgtcctcggctgatgcctcgctgcgtgtg
tgggatattcctacgggcaagtgcgtggactggctgcgtttccacaagccggtgactggt
ttggcggtgtcccctacgggcgagttcctggccacgacgcacgttgggcacgtcggtatt
ttcctgtgggccaaccgcagcttcttcacggaggtcttcctcgactcggagcctgctgag
cctgttcttatggacatgcccgtgtcgctgaacgaggtcgacaacagcgaccagctcgga
tacggcacggagcggaaccctcagctgtctgttttgagtgtggacgagcagcagtcacag
agcagcaaggtggagaaaggggaagagagctccgagcctctggatgcctccctcatcaca
ctgtctacggcgccgcgtgcgttctggcagtcactgttcaacttggagctcatcaagaag
cgcaacaagcctattgagcctcctaaggcccccgaacaggctccgttcttccttcagacc
gctcgcaaggatgatgtccacccgacgttcgtccccgttgctcccgaggcgaaaaaggag
accaagaagaaggaggaggacgaggatgttgccatggacggctggggcgtcggcgacgac
gacgaggcatggggagacgacgatggcgaggagcccgaggacgacgcagaagttgctgcc
ccgagctctcggatcgtcaagacggaaggcattgtcacttcgcgctgtaagctggccaca
ctgctggcgaaggcgatcaagctggaggaggaggaagacgacacggtctcacgtttccat
gaggtggccgtgtacatgcagtcgctctctgcgtcggcggtggacgttgagatgagcacc
ctgtgcatgggcgacttcgacgaggagggcaagaagctgctgggccggttcctggacttc
ctgcgcgaggagatgcggacgcgccgcgacttccaggtgctgcaggcctatctgaaccgc
ttcctgaagctgcacgaggagctgctggtggcggacccggcgttgctggcgcaggtggac
gagctcggatcattgcagcagcagcagtggcagcacctgcagaagctcctgcacaacaat
ttgtgtctggtgcagtacctcagcaagatccagatgtaa
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