Phytophthora sojae: PHYSODRAFT_309277
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Entry
PHYSODRAFT_309277 CDS
T03459
Name
(RefSeq) hypothetical protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
psoj
Phytophthora sojae
Pathway
psoj03013
Nucleocytoplasmic transport
psoj03015
mRNA surveillance pathway
psoj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
psoj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PHYSODRAFT_309277
09122 Translation
03013 Nucleocytoplasmic transport
PHYSODRAFT_309277
03015 mRNA surveillance pathway
PHYSODRAFT_309277
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psoj03019
]
PHYSODRAFT_309277
03041 Spliceosome [BR:
psoj03041
]
PHYSODRAFT_309277
Enzymes [BR:
psoj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PHYSODRAFT_309277
Messenger RNA biogenesis [BR:
psoj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
PHYSODRAFT_309277
Spliceosome [BR:
psoj03041
]
Complex C
Other components
EJC/TREX
PHYSODRAFT_309277
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
PHYSODRAFT_309277
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
20643125
NCBI-ProteinID:
XP_009515690
JGI:
Physo3_309277
UniProt:
G4YH96
LinkDB
All DBs
Position
Unknown
AA seq
425 aa
AA seq
DB search
MDIICQAKSGMGKTAVFVLATLHQIEPVDGQISVVVMCHTRELAFQIAHEYERFSKYLVD
VKTGVFYGGVPISQNREALKNNPPHILVGTPGRILGLLREKTLKLDKVKHFVMDECDKML
EAIDMRRDIQEIFKATPHDKQVMMFSATLSKEIRPVCRKFCQDPMEIYVDDETKLTLHGL
QQYYIKLEESEKNRKLNDLLDALEFNQVVIFVSKKNRGRELNRLLNECNFPSICITADLS
QEERIKRYKSFKDFQKRILVTTDLFGRGMDIERVNIVVNYDFPNDSDQYLHRVGRAGRFG
TKGLSISFISSEEDTEMLAKVQSRFEVNIPELPDQIDISTTPFSAPPSSPARVSDVVPPL
PPSPLVASRSREPSWERRRPSGAPAPGCWRSRSRGPPRSHVRRLGLDLLGTASLSWTGPP
WASVA
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atggacatcatttgccaggccaagtcgggtatgggaaagactgctgttttcgtacttgct
acgctgcaccagatcgagcccgtggacggtcagattagcgtcgtggtgatgtgccacacc
cgcgagctggcgttccagatcgctcacgagtatgagcgtttcagcaagtaccttgtggac
gtgaagaccggtgtgttctacggaggcgtgcctatttcgcagaaccgtgaggctctgaag
aacaacccgccccacatccttgtgggcactcccggccgtatcctgggtctgcttcgcgaa
aagaccctgaagctggacaaggtgaagcacttcgtcatggatgagtgtgacaagatgctc
gaagccatcgacatgcgtcgtgacatccaggagatcttcaaggcgacgccgcacgacaag
caggtgatgatgttctcggcgactctgtcgaaggaaatccgccccgtgtgtcgcaagttc
tgccaggacccgatggagatttacgtcgacgatgagacgaagctgacccttcacggtctg
cagcagtactacatcaagctggaggagtcggagaagaaccgcaagctgaacgacctgctg
gatgcgctggagttcaaccaggtggtgatcttcgtctccaagaagaaccgtggacgcgag
ctcaaccgcctgctgaacgagtgcaacttcccctcgatctgcattacggccgacctctct
caggaggagcgtattaagcggtacaaaagcttcaaggacttccagaagcgtatcctggtg
acgacggaccttttcggccgtggtatggatattgagcgtgtcaacatcgtggtcaactac
gacttcccgaacgacagcgaccagtaccttcaccgcgtgggccgtgccggtcgtttcggt
accaagggtctgtcgattagcttcatctcgtcggaggaggacacggagatgcttgctaag
gtgcagtctcgtttcgaggtcaacatccccgagctgcccgaccagatcgacatctccacc
actccattttccgcgcctccatcttctcctgctcgcgtttctgacgtcgttcctcctctg
ccgccatctcctcttgtcgcttcacggtcccgcgagccttcttgggaacgaagacggcct
tcgggagcgcccgcacctggctgttggcggtcacgaagccgcggtcctcctcgtagccat
gtgcgaaggctgggacttgacctgctcggtaccgcgtcactttcttggacgggtccacct
tgggcttcagtggcttga
DBGET
integrated database retrieval system
