KEGG   Phytophthora sojae: PHYSODRAFT_324947
Entry
PHYSODRAFT_324947 CDS       T03459                                 
Name
(RefSeq) hypothetical protein
  KO
K12880  THO complex subunit 3
Organism
psoj  Phytophthora sojae
Pathway
psoj03013  Nucleocytoplasmic transport
psoj03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:psoj00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    PHYSODRAFT_324947
  09122 Translation
   03013 Nucleocytoplasmic transport
    PHYSODRAFT_324947
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:psoj03019]
    PHYSODRAFT_324947
   03041 Spliceosome [BR:psoj03041]
    PHYSODRAFT_324947
Messenger RNA biogenesis [BR:psoj03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     PHYSODRAFT_324947
Spliceosome [BR:psoj03041]
 Complex C
  Other components
   EJC/TREX
    PHYSODRAFT_324947
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    PHYSODRAFT_324947
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 Beta-prop_WDR3_1st WD40 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 WD40_Prp19 EIF3I Beta-prop_WDR3_2nd WD40_Gbeta Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_2nd ANAPC4_WD40 WDR55 WD40_MABP1-WDR62_1st Beta-prop_TEP1_2nd Beta-prop_IFT122_1st Beta-prop_EML Beta-prop_WDR19_1st Beta-prop_Aladin WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st Cytochrom_D1 Beta-prop_RIG_2nd WDR90_beta-prop_4th Beta-prop_WDR36-Utp21_1st Beta-prop_SCAP WD40_like eIF2A Beta-prop_WDR41 Beta-prop_IFT140_1st WD40_RFWD3 Beta-prop_WDR35_TULP_N Beta-prop_TEP1_C Tricorn_2nd YNCE Beta-prop_Vps41 Beta-prop_VPS8 NBCH_WD40 Beta-prop_HPS5 Beta-prop_EIPR1 Beta-prop_SPT8 Beta-prop_DCAF12 RMC1_N Beta-prop_Nup120_160 CoV_NSP9
Other DBs
NCBI-GeneID: 20645193
NCBI-ProteinID: XP_009519043
JGI: Physo3_324947
UniProt: G4YW01
LinkDB
Position
Unknown
AA seq 328 aa
MALRGESAPCGKPAAYVQLPELDGHSRKVYALAFNCDGTMLASGSLDRSIRIWDPVTERE
LTDLRGHSDSILSLAWDPTTPHRLASTGSDKTVRFWDAKTGRIVNSVSLPADAVNIAYSH
DAKYVVVGNLNMDCITLIDTRKARVVRRVVNPFESYEMQFSKSGFLFVAAGHAAGFGTFE
IMRVVAEKKGNPNLESAHKVMAHAGSCVSLDFHPSGRYLVLGGLDSLVSVWDLEELYCVK
TFVVTTSSIRFVRFSHDGKYIAVGMDDPNVVVVEVESGEEVVNLQLQNNLQYLSWHPSKN
VLAYVGDKGSSDKNSNRDGVIKMIEMKE
NT seq 987 nt   +upstreamnt  +downstreamnt
atggcgctgcggggcgagagtgcgccgtgcggcaagccggcggcatacgtgcagctgccg
gagctggacggacattcgcgcaaggtctacgcgctggccttcaactgcgatggcaccatg
ctggcgtccggctcgctcgaccgcagcatccgcatctgggaccccgtcaccgagcgcgag
ctgacggacctgcgcggccactcagactcgatcctgtcgctggcctgggaccccacgacg
ccgcaccggttggctagcacaggctccgacaagacggtgcgcttctgggacgccaagacc
ggccgcatcgtcaacagcgtctcgctgcccgccgacgccgtcaacatcgcgtacagccat
gacgccaagtacgttgtggtgggcaacctgaacatggactgcatcacgctcatcgacacg
cgcaaggcgcgcgtggtgcggcgtgtcgtgaatccgttcgagtcctacgagatgcagttc
agcaaaagcggcttcctcttcgtggcggcgggccacgctgcaggcttcggcacgttcgag
atcatgcgggttgtagctgaaaagaagggcaatccgaatcttgaaagcgcgcacaaggtc
atggcacacgcaggaagctgcgtcagcttggacttccacccatcgggaaggtatttggtt
ctgggcggcctggactcactcgttagtgtgtgggacctggaagagctgtactgcgtcaaa
acattcgtggtcacaacatcaagcattaggtttgtccggtttagccacgacggcaagtac
attgctgttggcatggatgaccccaacgtggtcgtggtggaagtggagagcggtgaggag
gtcgtgaacctccaactccaaaacaacctgcagtacttgagctggcatccaagcaaaaac
gtgctggcgtatgttggcgacaagggctcaagtgacaagaactctaaccgcgacggtgtc
attaagatgatcgagatgaaggagtag

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