Phytophthora sojae: PHYSODRAFT_345391
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Entry
PHYSODRAFT_345391 CDS
T03459
Name
(RefSeq) hypothetical protein
KO
K20103
ATP-dependent RNA helicase DDX60 [EC:
5.6.2.7
]
Organism
psoj
Phytophthora sojae
Brite
KEGG Orthology (KO) [BR:
psoj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psoj03019
]
PHYSODRAFT_345391
Enzymes [BR:
psoj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PHYSODRAFT_345391
Messenger RNA biogenesis [BR:
psoj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
PHYSODRAFT_345391
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
ResIII
Helicase_C
Motif
Other DBs
NCBI-GeneID:
20648711
NCBI-ProteinID:
XP_009522826
JGI:
Physo3_345391
UniProt:
G4Z3P0
LinkDB
All DBs
Position
Unknown
AA seq
1109 aa
AA seq
DB search
MGDKKSDMYDVNWQKVWPDRMPVILRDLAPTNPFNPRNLWPEEQEEEAAAAAQAQTQTQA
QAQAAKDKKGAKEDKKGGAGGSGKLKKADLIRMQLAKDKAQKQSKVDEEKLANVKKSKNL
LDMKMVTPTGRLKQLYEILRDCCKKKEFTDAVDTLWEIQRTKLMPERSALGPDGRKKHEK
QRKMDEEEDAKLQAELNAVHKKYRKYVKTVNDYLSGKDLIEWQLTEMSDRLPPLNMHHMN
KFILDDWQRTVLGHIDQNHSVIVCAPTSSGKTVLSSYVSVVGGKVLFIVPTDPLAWQVAA
LFQAMVKGSVALITEGTVFLPPGFRIAVGTPRAVESTLVEIGYDFQYAVYDEVHDLNGPE
GDALERIIKAVTCPFLALSATIGNAQKLKSWWESHLARDVHLLEYKGRFINLQRIIWFEE
EAKEESANKKEMVYLHPCAGVTLDYLTTIGFDAGDLAFTPRDAFALWQAMEKFYPKELIE
DVDPHKFFELEDETEGDAAAPAASSKKDKKGKKEKKSKKDKKSKKDDDDDEEFVVDLGKR
THRITLMESKKYEDKIKKRLEELASKEPKITQTLLDFFAPPASLQDITVELHDPRDINPT
SSVDVYALVNQLCAKNLVPAIAFQLDSVRCRQLFNQLLASIEAAETAKYPNFREKVQLEY
AEWEKNQATMKKRADKVKAKGKEEDDREAQAFEEKPPPDIYAPHPDFVLTPAGSRLTATE
FKEIKWQLRRELSEDSDDGHALVRSLRRGIAIYNQNLPAAYLRIVQALAQAGRLAVVFSD
DSLAYGVNMPFRTCCFCEDTPNDVLTSLMVQQMAGRAGRRGLDRQGNILFAGLSWSRIQF
LMRGLLPDVTGRKSMYPTIALQKLLSNNVTGDIMQRIVAHPLHDYMLQEATPSSPKKQES
YLTKSVEWMTHFGLTKPEYSLAVDVSVAKLVWECRDDPSEALGIFWILEALLKEFHHKPG
DNIALQLALFNMLLRVVGREKFHPEYAHGSELAPLPGQEEAWEKISAMLQTYEAKLNELG
ENAPEELRLRVALTDPLDGYVFRTVVENLIPQGLGTSQLNQIKKRLRRVGDRLRLMHNLL
MYSGRYGELEEIVRKCFRRIKWILIDSEV
NT seq
3330 nt
NT seq
+upstream
nt +downstream
nt
atgggggacaagaagtcggacatgtacgacgtcaactggcagaaggtctggcccgaccgc
atgcccgtgatcctgcgcgacctggcgcccacgaaccccttcaacccgcgcaacctgtgg
ccggaggagcaggaggaggaggccgccgcggcggcgcaggcccagactcagactcaggcc
caggcccaggcggccaaggacaagaagggcgccaaggaggacaagaagggcggcgccggt
ggcagtggcaagctcaagaaggcggacctgatccgcatgcagctggccaaggacaaggcc
cagaagcagagcaaggtggacgaggagaagctggccaacgtcaagaagtccaagaacctg
ctggacatgaagatggtgacgcccacgggccgcctcaagcagctgtacgagatcctgcgc
gactgctgcaagaagaaggagttcacggacgccgtggacacgctctgggagatccagcgc
accaagctcatgcccgagcgctcggcactgggccccgacggccgcaagaagcacgagaag
cagcgcaagatggacgaggaggaggacgccaagctgcaggccgagctcaacgccgtgcac
aagaagtaccgcaagtacgtcaagacggtcaacgattacctatccggcaaggacctgatc
gagtggcagctcacggagatgtcggaccgcctgccgccgctcaacatgcaccacatgaac
aagttcatcctcgacgactggcagcgcacggtgctgggccacatcgaccagaaccactcg
gtcatcgtgtgcgcgcccacgagttccggcaagacggtgctgtcctcgtacgtgtcggtc
gtcggtggcaaggtgctgttcatcgtccccacggacccgctggcgtggcaggttgccgcg
ctcttccaggccatggtcaagggatccgtggcgctcatcacggaaggaacggtcttcctg
ccgcctggtttccgcatcgctgtcggtacgccgcgcgccgttgagtcgacgctcgttgag
atcggctacgacttccagtacgccgtgtacgacgaggtccacgacctgaacggacccgag
ggcgacgccctggagcgcatcatcaaggctgtgacgtgccccttcttggctctgtccgcc
accatcggcaacgcccagaagctcaagagctggtgggagtcgcacctggcgcgcgacgtg
catctgctggagtacaagggccgtttcattaacctgcagcgtatcatttggttcgaggag
gaggccaaggaggagagcgccaacaagaaggagatggtctacctgcacccgtgtgccggt
gtgacgctggactacctgaccacgatcggtttcgacgcaggtgatctggcgttcacccct
cgtgatgcgttcgccttgtggcaggccatggagaagttctacccgaaggagctgattgaa
gacgtggacccgcacaagttcttcgagctggaggacgagaccgagggcgacgctgcagcc
cccgccgcttcgagcaagaaggacaagaagggcaagaaggagaagaagtccaagaaggac
aaaaagtccaagaaggacgatgacgacgatgaggagttcgtcgtagacctgggcaagcgc
actcaccgtatcacgctgatggagtccaagaagtacgaggacaagatcaagaagcgcctg
gaagaactggcgtccaaggaaccgaagatcacccagactctgctcgacttcttcgcgcct
ccggctagtctgcaggacatcacggtggagctgcacgacccgcgcgacatcaaccccacc
agctcggtggacgtgtatgcgctcgtgaaccagctttgcgccaagaaccttgttcctgcc
attgcattccagctcgactccgtccggtgtcgccagctcttcaaccagctccttgcgtcc
attgaggccgccgagacggccaagtacccgaacttccgcgagaaggtgcagcttgagtac
gccgagtgggagaaaaaccaggcgaccatgaagaagcgcgcggacaaggtgaaggccaag
ggcaaggaggaggacgaccgcgaggcccaggcattcgaggagaagccgcctccggacatt
tacgccccgcacccggacttcgtcctcacccctgctggctcgcgcctcactgccacggag
ttcaaggagatcaagtggcagctccgtcgtgagctttcagaggattcggatgacggacac
gcgctggtgcgctcgcttcgccgcggtattgctatctacaaccagaacctgcccgcggcc
tatctgcgtattgtgcaggcccttgcccaggctggtcgtctcgcggttgtcttttcggac
gactcgctggcctacggtgtcaacatgccgttccgcacgtgctgcttctgcgaggacaca
ccgaacgacgtcctgacctcgctgatggtgcagcagatggctggtcgcgccggtcgtcgt
ggtctggacaggcagggtaacatcctgttcgctggcctctcgtggtcgcgcatccagttc
ttgatgcgcggtctgctgccggacgtcacgggccgcaagtcgatgtacccgacgatcgcc
ctgcaaaagctgctctcgaacaacgtgacgggcgacatcatgcagcgcattgtggcgcac
ccgctgcacgactacatgctccaggaggccacgccgtcgtccccgaagaagcaggaatcg
tacttgaccaagtcggtcgagtggatgacgcacttcggcttgaccaagccggagtacagc
ctcgcggtggacgtgtcggtcgccaagctcgtgtgggagtgccgcgacgacccgtcggag
gcgctgggtatcttctggatcctggaggcgctgctgaaggagttccaccacaagcccggt
gacaacatcgcgctgcagcttgcgctgttcaacatgctgctgcgcgttgttggccgcgag
aagttccacccggagtacgcgcacggatccgagcttgccccgctccctggccaggaggag
gcttgggagaagatatcggccatgctgcagacgtacgaggccaagctgaacgagctgggc
gagaacgcgccggaggagctgcgcctgcgggtggccttgaccgacccgctcgacggctac
gtcttccgcaccgtcgtggagaacctgatccctcagggccttggcacgtcgcagctgaac
cagatcaagaagcgcctgcgtcgcgtgggtgaccgcctccgcctgatgcacaacctgctc
atgtacagcggacgctacggcgagctggaggagatcgtgcgtaagtgtttccgccgtatc
aagtggatcctgatcgactcggaggtgtaa
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integrated database retrieval system
