Phytophthora sojae: PHYSODRAFT_508027
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Entry
PHYSODRAFT_508027 CDS
T03459
Name
(RefSeq) hypothetical protein
KO
K03143
transcription initiation factor TFIIH subunit 3
Organism
psoj
Phytophthora sojae
Pathway
psoj03022
Basal transcription factors
psoj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psoj00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
PHYSODRAFT_508027
09124 Replication and repair
03420 Nucleotide excision repair
PHYSODRAFT_508027
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psoj03021
]
PHYSODRAFT_508027
03400 DNA repair and recombination proteins [BR:
psoj03400
]
PHYSODRAFT_508027
Transcription machinery [BR:
psoj03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
PHYSODRAFT_508027
DNA repair and recombination proteins [BR:
psoj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
PHYSODRAFT_508027
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb4
Motif
Other DBs
NCBI-GeneID:
20658817
NCBI-ProteinID:
XP_009529831
JGI:
Physo3_508027
UniProt:
G4ZNE6
LinkDB
All DBs
Position
Unknown
AA seq
298 aa
AA seq
DB search
MASTNAQADGAASSDTANEGLLVLVIDTNPVHWFAQGGSAADRAGLQQLISSTLVFVNSY
LLLHRSNRIVIIAAHAGKSAMLYPDPEQDDTTGSAEQAARVNAGVMQRLQQLSDAPLDPA
KPNRTAIAASLSRALCFINRAINEEPDLRPRILVVQKSPDVSEHYIAIMNGIFSAQKKSV
AVDACILANEHSSFMQQAAYLTGGIYYKPNDHSGLLQYLISIYLPDPSMRKLLKLPSQDS
VDFRAMCFCHREVISTAYVCPVCLSLFCEFRPICSTCGIRSHIQPKKNGLLKKRPRVA
NT seq
897 nt
NT seq
+upstream
nt +downstream
nt
atggccagcaccaacgcgcaggccgacggggctgccagcagcgacaccgcaaacgaaggg
ctgctggtgctggtgatcgacaccaatccggtgcactggttcgcgcagggcggcagcgcg
gcggaccgcgcggggctgcagcagctcatctccagcacgctcgtgttcgtgaactcgtac
ctgctgctgcaccgcagcaaccgcatcgtgatcatcgcagcccatgctggcaagagcgcg
atgctgtacccagacccagagcaggacgacacgactgggagcgccgaacaggctgccagg
gtgaacgctggcgtcatgcagcggctgcagcagctgagcgacgctccgctcgacccggcc
aagcccaaccgaacggccattgccgcgtcactgtcgcgtgctctttgcttcatcaaccgc
gccatcaacgaggagccggatctgcgaccgcggatcttggtcgtccagaagtctccggac
gtgtcggagcactacatcgccatcatgaacggcatcttctcggcccagaagaagagcgtt
gcggtcgacgcctgcatccttgcaaacgagcactcgtcgttcatgcagcaagcagcgtat
cttacgggcggcatctactacaagcccaacgaccacagcggcctgctgcagtatctcatc
tcgatctacctgccagacccgtccatgcgcaagctgctgaagcttccgtcacaggactcg
gtggacttccgcgcaatgtgcttctgccaccgagaggtcatctccacggcgtacgtgtgc
cccgtgtgcctgtcgctgttttgcgagttccgacccatctgctccacgtgcggcatccgc
agccacatccagcccaagaagaacggcttgctgaagaagcgcccgcgcgttgcctaa
DBGET
integrated database retrieval system